miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18285 3' -56.4 NC_004681.1 + 352 0.67 0.730672
Target:  5'- cCGUCAugGGcGccaUCCGCgaGGACGaGCCc -3'
miRNA:   3'- -GCGGUugCC-Ca--AGGUGgaCUUGC-CGG- -5'
18285 3' -56.4 NC_004681.1 + 1387 0.71 0.452779
Target:  5'- gGCCAccuauCGGGccugCCGCaagaUGAugGGCCa -3'
miRNA:   3'- gCGGUu----GCCCaa--GGUGg---ACUugCCGG- -5'
18285 3' -56.4 NC_004681.1 + 2121 0.67 0.678877
Target:  5'- cCGCCcuccACGa---CCACCUGGccGCGGCCg -3'
miRNA:   3'- -GCGGu---UGCccaaGGUGGACU--UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 2239 0.67 0.730672
Target:  5'- aCGCCGcgcaaccugcCGGGUUaCCACaucagcggGggUGGCCa -3'
miRNA:   3'- -GCGGUu---------GCCCAA-GGUGga------CuuGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 2829 0.72 0.415684
Target:  5'- aGCCcGCGGGgaCCGCCgcuacACGGUCa -3'
miRNA:   3'- gCGGuUGCCCaaGGUGGacu--UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 3096 0.66 0.769551
Target:  5'- aGUCGuaggagaGCGGGUaccggCUGCCUcGAUGGCCg -3'
miRNA:   3'- gCGGU-------UGCCCAa----GGUGGAcUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 4237 0.68 0.626045
Target:  5'- aGCgAugGGGUUgUugcggGCCUcAGCGGCCu -3'
miRNA:   3'- gCGgUugCCCAAgG-----UGGAcUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 4423 0.68 0.636638
Target:  5'- aGCCAAacUGGa--CCGCCUGAacgACGGUCg -3'
miRNA:   3'- gCGGUU--GCCcaaGGUGGACU---UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 5630 0.66 0.780182
Target:  5'- aGCUucuCGGGgguaCCGCucuuguucuuCUGGAUGGCCa -3'
miRNA:   3'- gCGGuu-GCCCaa--GGUG----------GACUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 6407 0.67 0.689358
Target:  5'- gGCCuuCGGGUcaUCCgACCgcggcaggcccaUGAucucGCGGCCc -3'
miRNA:   3'- gCGGuuGCCCA--AGG-UGG------------ACU----UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 7310 0.7 0.542166
Target:  5'- aCGCCAGCGacGUUCCACCcc--CGGCa -3'
miRNA:   3'- -GCGGUUGCc-CAAGGUGGacuuGCCGg -5'
18285 3' -56.4 NC_004681.1 + 7832 0.71 0.491605
Target:  5'- uCGCCcuCGGGgaccUCCACCUcGAUGGUg -3'
miRNA:   3'- -GCGGuuGCCCa---AGGUGGAcUUGCCGg -5'
18285 3' -56.4 NC_004681.1 + 8283 0.68 0.647226
Target:  5'- aGCCucgguGGCGcGGacgCCGCCaaGGACGGCCu -3'
miRNA:   3'- gCGG-----UUGC-CCaa-GGUGGa-CUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 8331 0.66 0.770524
Target:  5'- gCGCCu-CGaccUCgGCCUGGugGGCCu -3'
miRNA:   3'- -GCGGuuGCccaAGgUGGACUugCCGG- -5'
18285 3' -56.4 NC_004681.1 + 8512 0.67 0.720455
Target:  5'- uCGCgGACGGuGagaCCGCCcccGCGGCCa -3'
miRNA:   3'- -GCGgUUGCC-Caa-GGUGGacuUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 8915 0.66 0.750821
Target:  5'- uGgCGGCGGGUaCC-CCggcgucAACGGCCu -3'
miRNA:   3'- gCgGUUGCCCAaGGuGGac----UUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 9191 0.67 0.730672
Target:  5'- aGCCAGCGG----CGCCggUGAcgacGCGGCCa -3'
miRNA:   3'- gCGGUUGCCcaagGUGG--ACU----UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 9371 0.7 0.531901
Target:  5'- cCGCUGAucccgcUGGGcaCCAuCCUGGugGGCCa -3'
miRNA:   3'- -GCGGUU------GCCCaaGGU-GGACUugCCGG- -5'
18285 3' -56.4 NC_004681.1 + 9956 0.67 0.730672
Target:  5'- aCGCCuGCGGuGggCCgguucgucuucGCCUu-GCGGCCg -3'
miRNA:   3'- -GCGGuUGCC-CaaGG-----------UGGAcuUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 11813 0.67 0.719428
Target:  5'- uGCCGucagugggaucgaACGGGgugaagUCCGCCaggcUGGugGaGCCa -3'
miRNA:   3'- gCGGU-------------UGCCCa-----AGGUGG----ACUugC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.