miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18285 3' -56.4 NC_004681.1 + 23019 1.12 0.000779
Target:  5'- uCGCCAACGGGUUCCACCUGAACGGCCa -3'
miRNA:   3'- -GCGGUUGCCCAAGGUGGACUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 51675 0.78 0.197037
Target:  5'- uGCCggUGGGUugcUCCACCUcggagagGAACuGGCCa -3'
miRNA:   3'- gCGGuuGCCCA---AGGUGGA-------CUUG-CCGG- -5'
18285 3' -56.4 NC_004681.1 + 69238 0.77 0.202687
Target:  5'- gGCCAGCgcgucaucggcuGGGUcugUCCgacACCUGAugGGCCg -3'
miRNA:   3'- gCGGUUG------------CCCA---AGG---UGGACUugCCGG- -5'
18285 3' -56.4 NC_004681.1 + 14895 0.75 0.267221
Target:  5'- gGCCAGCuGGGcgCCAgCCUucaGGAUGGCCa -3'
miRNA:   3'- gCGGUUG-CCCaaGGU-GGA---CUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 62541 0.74 0.33161
Target:  5'- gGCCAuuCGGGUUU--CCUGGGCGGCg -3'
miRNA:   3'- gCGGUu-GCCCAAGguGGACUUGCCGg -5'
18285 3' -56.4 NC_004681.1 + 33429 0.73 0.363686
Target:  5'- uGCgGGCGGGUg-C-CCUGGACGGCg -3'
miRNA:   3'- gCGgUUGCCCAagGuGGACUUGCCGg -5'
18285 3' -56.4 NC_004681.1 + 59152 0.72 0.412077
Target:  5'- aCGCCGagaaGCGGGacggcaccuacgucgCCACCUaugucacGGACGGCCu -3'
miRNA:   3'- -GCGGU----UGCCCaa-------------GGUGGA-------CUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 2829 0.72 0.415684
Target:  5'- aGCCcGCGGGgaCCGCCgcuacACGGUCa -3'
miRNA:   3'- gCGGuUGCCCaaGGUGGacu--UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 29164 0.72 0.434001
Target:  5'- aCGUCAACGaccaaCC-CCUGGGCGGCCa -3'
miRNA:   3'- -GCGGUUGCccaa-GGuGGACUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 30756 0.72 0.434001
Target:  5'- aGUCcGCGGGcUCCaaggGCCUGGucaccaACGGCCg -3'
miRNA:   3'- gCGGuUGCCCaAGG----UGGACU------UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 12987 0.71 0.443334
Target:  5'- aGCCGGugUGGGUguggUCACCcGcAGCGGCCg -3'
miRNA:   3'- gCGGUU--GCCCAa---GGUGGaC-UUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 18895 0.71 0.443334
Target:  5'- aGCCGGucaGGuGUUCUACCUGGcCGGUCc -3'
miRNA:   3'- gCGGUUg--CC-CAAGGUGGACUuGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 1387 0.71 0.452779
Target:  5'- gGCCAccuauCGGGccugCCGCaagaUGAugGGCCa -3'
miRNA:   3'- gCGGUu----GCCCaa--GGUGg---ACUugCCGG- -5'
18285 3' -56.4 NC_004681.1 + 59098 0.71 0.462332
Target:  5'- gCGCCcucccccACGaGGUcuUCgagCACCUGGGCGGCCu -3'
miRNA:   3'- -GCGGu------UGC-CCA--AG---GUGGACUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 30586 0.71 0.47199
Target:  5'- gCGCCAAgGcGGUUCgCuGCCUG-ACGGCg -3'
miRNA:   3'- -GCGGUUgC-CCAAG-G-UGGACuUGCCGg -5'
18285 3' -56.4 NC_004681.1 + 7832 0.71 0.491605
Target:  5'- uCGCCcuCGGGgaccUCCACCUcGAUGGUg -3'
miRNA:   3'- -GCGGuuGCCCa---AGGUGGAcUUGCCGg -5'
18285 3' -56.4 NC_004681.1 + 18064 0.7 0.501553
Target:  5'- gGCCGcaugggcuGCGGGgcCCACCgGAGCcGCCc -3'
miRNA:   3'- gCGGU--------UGCCCaaGGUGGaCUUGcCGG- -5'
18285 3' -56.4 NC_004681.1 + 9371 0.7 0.531901
Target:  5'- cCGCUGAucccgcUGGGcaCCAuCCUGGugGGCCa -3'
miRNA:   3'- -GCGGUU------GCCCaaGGU-GGACUugCCGG- -5'
18285 3' -56.4 NC_004681.1 + 7310 0.7 0.542166
Target:  5'- aCGCCAGCGacGUUCCACCcc--CGGCa -3'
miRNA:   3'- -GCGGUUGCc-CAAGGUGGacuuGCCGg -5'
18285 3' -56.4 NC_004681.1 + 47465 0.7 0.552496
Target:  5'- uGCCAuCaGGUcgCCGCgUGcGACGGCCa -3'
miRNA:   3'- gCGGUuGcCCAa-GGUGgAC-UUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.