miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18285 3' -56.4 NC_004681.1 + 17415 0.68 0.668355
Target:  5'- cCGCCccACGGGUggCGCCaacaugUGGACGGgCa -3'
miRNA:   3'- -GCGGu-UGCCCAagGUGG------ACUUGCCgG- -5'
18285 3' -56.4 NC_004681.1 + 53030 0.68 0.626045
Target:  5'- uGUCGAUGGGUaggcacUCCGCCgagGuccucguGCGGCUc -3'
miRNA:   3'- gCGGUUGCCCA------AGGUGGa--Cu------UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 4423 0.68 0.636638
Target:  5'- aGCCAAacUGGa--CCGCCUGAacgACGGUCg -3'
miRNA:   3'- gCGGUU--GCCcaaGGUGGACU---UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 64714 0.68 0.636638
Target:  5'- aCGCUggUGGGUccgcCCACCUGGAacuacccaGCCu -3'
miRNA:   3'- -GCGGuuGCCCAa---GGUGGACUUgc------CGG- -5'
18285 3' -56.4 NC_004681.1 + 8283 0.68 0.647226
Target:  5'- aGCCucgguGGCGcGGacgCCGCCaaGGACGGCCu -3'
miRNA:   3'- gCGG-----UUGC-CCaa-GGUGGa-CUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 58666 0.68 0.647226
Target:  5'- gCGCC-GCGGGccaCACCUGccuGAUGGCg -3'
miRNA:   3'- -GCGGuUGCCCaagGUGGAC---UUGCCGg -5'
18285 3' -56.4 NC_004681.1 + 19780 0.68 0.657801
Target:  5'- aCGCUggUGugcGGcUCCGCUaaGAACGGCCg -3'
miRNA:   3'- -GCGGuuGC---CCaAGGUGGa-CUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 46295 0.68 0.657801
Target:  5'- aCGuCCAcgGCGGGcagCCAuCCUGcaucGugGGCCa -3'
miRNA:   3'- -GC-GGU--UGCCCaa-GGU-GGAC----UugCCGG- -5'
18285 3' -56.4 NC_004681.1 + 41022 0.68 0.668355
Target:  5'- uGCCAuccaucgcgGCaGGGUagCCACCcaUGcGACGGCCc -3'
miRNA:   3'- gCGGU---------UG-CCCAa-GGUGG--AC-UUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 18680 0.68 0.626045
Target:  5'- gGgCAACGGGcagCCGCCUGGACcucucGUCa -3'
miRNA:   3'- gCgGUUGCCCaa-GGUGGACUUGc----CGG- -5'
18285 3' -56.4 NC_004681.1 + 47465 0.7 0.552496
Target:  5'- uGCCAuCaGGUcgCCGCgUGcGACGGCCa -3'
miRNA:   3'- gCGGUuGcCCAa-GGUGgAC-UUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 7310 0.7 0.542166
Target:  5'- aCGCCAGCGacGUUCCACCcc--CGGCa -3'
miRNA:   3'- -GCGGUUGCc-CAAGGUGGacuuGCCGg -5'
18285 3' -56.4 NC_004681.1 + 59152 0.72 0.412077
Target:  5'- aCGCCGagaaGCGGGacggcaccuacgucgCCACCUaugucacGGACGGCCu -3'
miRNA:   3'- -GCGGU----UGCCCaa-------------GGUGGA-------CUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 2829 0.72 0.415684
Target:  5'- aGCCcGCGGGgaCCGCCgcuacACGGUCa -3'
miRNA:   3'- gCGGuUGCCCaaGGUGGacu--UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 29164 0.72 0.434001
Target:  5'- aCGUCAACGaccaaCC-CCUGGGCGGCCa -3'
miRNA:   3'- -GCGGUUGCccaa-GGuGGACUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 30756 0.72 0.434001
Target:  5'- aGUCcGCGGGcUCCaaggGCCUGGucaccaACGGCCg -3'
miRNA:   3'- gCGGuUGCCCaAGG----UGGACU------UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 18895 0.71 0.443334
Target:  5'- aGCCGGucaGGuGUUCUACCUGGcCGGUCc -3'
miRNA:   3'- gCGGUUg--CC-CAAGGUGGACUuGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 1387 0.71 0.452779
Target:  5'- gGCCAccuauCGGGccugCCGCaagaUGAugGGCCa -3'
miRNA:   3'- gCGGUu----GCCCaa--GGUGg---ACUugCCGG- -5'
18285 3' -56.4 NC_004681.1 + 30586 0.71 0.47199
Target:  5'- gCGCCAAgGcGGUUCgCuGCCUG-ACGGCg -3'
miRNA:   3'- -GCGGUUgC-CCAAG-G-UGGACuUGCCGg -5'
18285 3' -56.4 NC_004681.1 + 9371 0.7 0.531901
Target:  5'- cCGCUGAucccgcUGGGcaCCAuCCUGGugGGCCa -3'
miRNA:   3'- -GCGGUU------GCCCaaGGU-GGACUugCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.