Results 21 - 40 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18286 | 3' | -58.8 | NC_004681.1 | + | 51421 | 0.66 | 0.676356 |
Target: 5'- uCCGCggCGACGgUGAUGAcGUCGGCgGa -3' miRNA: 3'- -GGCG--GCUGCgGCUACUcCAGCUGgCg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 28020 | 0.66 | 0.655898 |
Target: 5'- uUGCCG-UGCCGccGAGGccccgCGuGCCGCu -3' miRNA: 3'- gGCGGCuGCGGCuaCUCCa----GC-UGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 27713 | 0.66 | 0.655898 |
Target: 5'- gCCGCCGccaGCGCCaccGAGGgUGACCcagGCg -3' miRNA: 3'- -GGCGGC---UGCGGcuaCUCCaGCUGG---CG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 8293 | 0.66 | 0.676357 |
Target: 5'- gCGCgGACGCCGccaaggacggccuGgacaacgacauccccGAGGUCGAgguCCGCa -3' miRNA: 3'- gGCGgCUGCGGC-------------Ua--------------CUCCAGCU---GGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 26298 | 0.66 | 0.676357 |
Target: 5'- uCCGaCGugGCCGcacUGcgccGGGUCGAUUGUg -3' miRNA: 3'- -GGCgGCugCGGCu--AC----UCCAGCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 16569 | 0.66 | 0.673296 |
Target: 5'- uUGCCGACGagcgcuacaagcccCCGgcGuccccGGUCGACCuGCa -3' miRNA: 3'- gGCGGCUGC--------------GGCuaCu----CCAGCUGG-CG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 36867 | 0.66 | 0.666142 |
Target: 5'- gCGCuCGGCGuuGAUcAGGUCuAUUGCa -3' miRNA: 3'- gGCG-GCUGCggCUAcUCCAGcUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 508 | 0.67 | 0.635363 |
Target: 5'- uCCaCCGGCcaagagacgguGCCGGUGcccuugccccAGGUCuuGACCGCg -3' miRNA: 3'- -GGcGGCUG-----------CGGCUAC----------UCCAG--CUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 25197 | 0.67 | 0.614818 |
Target: 5'- cCUGgCGGCGCUGGcaacgGcGG-CGACCGCu -3' miRNA: 3'- -GGCgGCUGCGGCUa----CuCCaGCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 23429 | 0.67 | 0.622006 |
Target: 5'- aCCGUCGACcucgGCCacucccgcaguucuGAUG-GGUCGggcGCCGCc -3' miRNA: 3'- -GGCGGCUG----CGG--------------CUACuCCAGC---UGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 15912 | 0.67 | 0.625088 |
Target: 5'- aUCGCCGugGCCGc---GGUCaaGACCa- -3' miRNA: 3'- -GGCGGCugCGGCuacuCCAG--CUGGcg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 59098 | 0.67 | 0.625088 |
Target: 5'- cCCcCCaGACGCUGA--AGGUCuACCGCc -3' miRNA: 3'- -GGcGG-CUGCGGCUacUCCAGcUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 12068 | 0.67 | 0.635364 |
Target: 5'- gCCGCauggaCGAgGCCGAguacguggccGAGGUCcGcCCGCg -3' miRNA: 3'- -GGCG-----GCUgCGGCUa---------CUCCAG-CuGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 632 | 0.67 | 0.625088 |
Target: 5'- gUGCC--CGUCGuUGAGGgacucgCGGCCGCg -3' miRNA: 3'- gGCGGcuGCGGCuACUCCa-----GCUGGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 56414 | 0.67 | 0.645636 |
Target: 5'- aCGCCuuGGCGCCG-UGGGuGUgcuUGACCGg -3' miRNA: 3'- gGCGG--CUGCGGCuACUC-CA---GCUGGCg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 51133 | 0.67 | 0.635363 |
Target: 5'- cUCGCCGuCGCCGA--GGG-CGAUgaCGCc -3' miRNA: 3'- -GGCGGCuGCGGCUacUCCaGCUG--GCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 42056 | 0.67 | 0.635363 |
Target: 5'- gCGCCGguuaagcagGCGCCauUGAGGUUGGCgucuUGCa -3' miRNA: 3'- gGCGGC---------UGCGGcuACUCCAGCUG----GCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 68280 | 0.67 | 0.635363 |
Target: 5'- -gGCCuuGACGUCGAUGGGGaaGAguUCGCu -3' miRNA: 3'- ggCGG--CUGCGGCUACUCCagCU--GGCG- -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 16716 | 0.67 | 0.625088 |
Target: 5'- cCCGCCGccuccaucGCgGCCugcaguUGcAGGUCGACCGg -3' miRNA: 3'- -GGCGGC--------UG-CGGcu----AC-UCCAGCUGGCg -5' |
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18286 | 3' | -58.8 | NC_004681.1 | + | 11350 | 0.67 | 0.645637 |
Target: 5'- uCgGCaagGACGuuGAUGAGGcuggCGACCugGCu -3' miRNA: 3'- -GgCGg--CUGCggCUACUCCa---GCUGG--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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