miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18286 3' -58.8 NC_004681.1 + 3588 0.66 0.696668
Target:  5'- gUCGCUGACGgugaacaguCCGGUGAaaucuacgGcGUCGcCCGCg -3'
miRNA:   3'- -GGCGGCUGC---------GGCUACU--------C-CAGCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 69103 0.66 0.686535
Target:  5'- cUCGUCGugagguucGCGCgGAUcGAGGUCGuugUCGCa -3'
miRNA:   3'- -GGCGGC--------UGCGgCUA-CUCCAGCu--GGCG- -5'
18286 3' -58.8 NC_004681.1 + 51421 0.66 0.676356
Target:  5'- uCCGCggCGACGgUGAUGAcGUCGGCgGa -3'
miRNA:   3'- -GGCG--GCUGCgGCUACUcCAGCUGgCg -5'
18286 3' -58.8 NC_004681.1 + 65888 0.66 0.655898
Target:  5'- gCgGCCGAgGCCGA-GAcGGaCGAacuCCGCc -3'
miRNA:   3'- -GgCGGCUgCGGCUaCU-CCaGCU---GGCG- -5'
18286 3' -58.8 NC_004681.1 + 12555 0.66 0.666141
Target:  5'- aCCGCuCGugGCCG---GGGccUCGACgGUg -3'
miRNA:   3'- -GGCG-GCugCGGCuacUCC--AGCUGgCG- -5'
18286 3' -58.8 NC_004681.1 + 25088 0.66 0.697679
Target:  5'- gCCGCCGACGCCuGUGccgccagagcccccGUCG-CCGg -3'
miRNA:   3'- -GGCGGCUGCGGcUACuc------------CAGCuGGCg -5'
18286 3' -58.8 NC_004681.1 + 16569 0.66 0.673296
Target:  5'- uUGCCGACGagcgcuacaagcccCCGgcGuccccGGUCGACCuGCa -3'
miRNA:   3'- gGCGGCUGC--------------GGCuaCu----CCAGCUGG-CG- -5'
18286 3' -58.8 NC_004681.1 + 27713 0.66 0.655898
Target:  5'- gCCGCCGccaGCGCCaccGAGGgUGACCcagGCg -3'
miRNA:   3'- -GGCGGC---UGCGGcuaCUCCaGCUGG---CG- -5'
18286 3' -58.8 NC_004681.1 + 28020 0.66 0.655898
Target:  5'- uUGCCG-UGCCGccGAGGccccgCGuGCCGCu -3'
miRNA:   3'- gGCGGCuGCGGCuaCUCCa----GC-UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 8293 0.66 0.676357
Target:  5'- gCGCgGACGCCGccaaggacggccuGgacaacgacauccccGAGGUCGAgguCCGCa -3'
miRNA:   3'- gGCGgCUGCGGC-------------Ua--------------CUCCAGCU---GGCG- -5'
18286 3' -58.8 NC_004681.1 + 36867 0.66 0.666142
Target:  5'- gCGCuCGGCGuuGAUcAGGUCuAUUGCa -3'
miRNA:   3'- gGCG-GCUGCggCUAcUCCAGcUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 2840 0.66 0.696668
Target:  5'- aCCGCCGcuacACGgucaCCGuccccGAGGcgcUCGACCGUg -3'
miRNA:   3'- -GGCGGC----UGC----GGCua---CUCC---AGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 26298 0.66 0.676357
Target:  5'- uCCGaCGugGCCGcacUGcgccGGGUCGAUUGUg -3'
miRNA:   3'- -GGCgGCugCGGCu--AC----UCCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 61443 0.66 0.686535
Target:  5'- -aGCCGACGCCaacaaGUGGGG-CGAugacgacguuCCGUu -3'
miRNA:   3'- ggCGGCUGCGGc----UACUCCaGCU----------GGCG- -5'
18286 3' -58.8 NC_004681.1 + 8570 0.66 0.666141
Target:  5'- -aGCCG-CaGCCGugccGGGGUCaGCCGCc -3'
miRNA:   3'- ggCGGCuG-CGGCua--CUCCAGcUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 67178 0.66 0.670231
Target:  5'- uCCGUCGcauCGCCaccgagaaggaaggcGAUGAGGcugUCGgcaACCGCa -3'
miRNA:   3'- -GGCGGCu--GCGG---------------CUACUCC---AGC---UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 46052 0.66 0.666142
Target:  5'- aCCGUCGAauucuacugGCUGGacaugGAaGUCGGCCGCg -3'
miRNA:   3'- -GGCGGCUg--------CGGCUa----CUcCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 5277 0.66 0.676356
Target:  5'- -gGCgGGCGCgGAcaGGGUCuGACCGUu -3'
miRNA:   3'- ggCGgCUGCGgCUacUCCAG-CUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 36089 0.66 0.676356
Target:  5'- aCGagauCGACGCCGAguugGAgcuggcaaucauGGgcuaCGACCGCa -3'
miRNA:   3'- gGCg---GCUGCGGCUa---CU------------CCa---GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 34011 0.66 0.686535
Target:  5'- gUGcCCGuCGUCGu---GGUCGACUGCg -3'
miRNA:   3'- gGC-GGCuGCGGCuacuCCAGCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.