miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18286 3' -58.8 NC_004681.1 + 24927 1.13 0.000478
Target:  5'- gCCGCCGACGCCGAUGAGGUCGACCGCg -3'
miRNA:   3'- -GGCGGCUGCGGCUACUCCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 49424 0.83 0.063225
Target:  5'- gCCGCCGugGCggaCGGUGAGGUUgugcaGACCGCc -3'
miRNA:   3'- -GGCGGCugCG---GCUACUCCAG-----CUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 58535 0.77 0.159376
Target:  5'- aCGUgGGCGCCGGucuUGGcGUCGGCCGCg -3'
miRNA:   3'- gGCGgCUGCGGCU---ACUcCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 19467 0.76 0.200071
Target:  5'- gUCGCCcAgGCCGGUGuGGUCGACC-Cg -3'
miRNA:   3'- -GGCGGcUgCGGCUACuCCAGCUGGcG- -5'
18286 3' -58.8 NC_004681.1 + 61667 0.75 0.220903
Target:  5'- -aGCCGcCGCCGcgGAGGcCG-CCGCc -3'
miRNA:   3'- ggCGGCuGCGGCuaCUCCaGCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 7367 0.75 0.243557
Target:  5'- gCGCacuCGGCGCCGAgGuGGaCGGCCGCg -3'
miRNA:   3'- gGCG---GCUGCGGCUaCuCCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 640 0.74 0.249514
Target:  5'- cCCGgugaUCGACGCCGAUccGGUCGACCu- -3'
miRNA:   3'- -GGC----GGCUGCGGCUAcuCCAGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 65075 0.74 0.249514
Target:  5'- cCCGCUcggGugGUCGccGAGGUCGGCCugGCa -3'
miRNA:   3'- -GGCGG---CugCGGCuaCUCCAGCUGG--CG- -5'
18286 3' -58.8 NC_004681.1 + 55919 0.74 0.26179
Target:  5'- aUGCCGAgCGCCu-UGAGGucaUCGACCGUc -3'
miRNA:   3'- gGCGGCU-GCGGcuACUCC---AGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 51499 0.73 0.285788
Target:  5'- gCCGCCagcucggcuacaccGACGCCaccaccuccGAaGAGGUCGACgCGCu -3'
miRNA:   3'- -GGCGG--------------CUGCGG---------CUaCUCCAGCUG-GCG- -5'
18286 3' -58.8 NC_004681.1 + 24969 0.73 0.287807
Target:  5'- cUCGCCauUGCUGGUGAGGgagccuuggCGGCCGCc -3'
miRNA:   3'- -GGCGGcuGCGGCUACUCCa--------GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 32691 0.73 0.287808
Target:  5'- cCCGCCGACGUCgcgcggcuggugGAUGAGGaccUCuuCCGCu -3'
miRNA:   3'- -GGCGGCUGCGG------------CUACUCC---AGcuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 55892 0.73 0.293935
Target:  5'- gCGCCGAagaacaagaacuaCGCCGcgcAGGUCGugCGCg -3'
miRNA:   3'- gGCGGCU-------------GCGGCuacUCCAGCugGCG- -5'
18286 3' -58.8 NC_004681.1 + 21306 0.73 0.315091
Target:  5'- cCCGCUGAagaaggcgaccauCGUCG-UGGacguGGUCGACCGCa -3'
miRNA:   3'- -GGCGGCU-------------GCGGCuACU----CCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 21437 0.73 0.315816
Target:  5'- cCCG-UGACGCCGcUGcGGUCGACCa- -3'
miRNA:   3'- -GGCgGCUGCGGCuACuCCAGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 32203 0.72 0.330574
Target:  5'- aCCGCUuccugGAUGCCGGUGAcgaccuuGUCGGCCGg -3'
miRNA:   3'- -GGCGG-----CUGCGGCUACUc------CAGCUGGCg -5'
18286 3' -58.8 NC_004681.1 + 69004 0.72 0.35365
Target:  5'- gCgGCCGugacgauggucaGCGCCucGAUGGcGUCGGCCGCg -3'
miRNA:   3'- -GgCGGC------------UGCGG--CUACUcCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 17490 0.72 0.35365
Target:  5'- gCCGUCcauGAUGuuGAcGAGGuccUCGACCGCg -3'
miRNA:   3'- -GGCGG---CUGCggCUaCUCC---AGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 14675 0.72 0.361591
Target:  5'- uUGCCGGUGCCGA--AGG-CGACUGCg -3'
miRNA:   3'- gGCGGCUGCGGCUacUCCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 54859 0.72 0.361591
Target:  5'- aCCgGCUGACGCCa---AGGaCGACCGCg -3'
miRNA:   3'- -GG-CGGCUGCGGcuacUCCaGCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.