miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18286 3' -58.8 NC_004681.1 + 508 0.67 0.635363
Target:  5'- uCCaCCGGCcaagagacgguGCCGGUGcccuugccccAGGUCuuGACCGCg -3'
miRNA:   3'- -GGcGGCUG-----------CGGCUAC----------UCCAG--CUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 632 0.67 0.625088
Target:  5'- gUGCC--CGUCGuUGAGGgacucgCGGCCGCg -3'
miRNA:   3'- gGCGGcuGCGGCuACUCCa-----GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 640 0.74 0.249514
Target:  5'- cCCGgugaUCGACGCCGAUccGGUCGACCu- -3'
miRNA:   3'- -GGC----GGCUGCGGCUAcuCCAGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 1045 0.7 0.438444
Target:  5'- gUCGCgGACGCCGA-GAGGauguaCGGCC-Cg -3'
miRNA:   3'- -GGCGgCUGCGGCUaCUCCa----GCUGGcG- -5'
18286 3' -58.8 NC_004681.1 + 2022 0.67 0.614818
Target:  5'- gCgGCCagGugGUCGugGAGGgCGGCCGCa -3'
miRNA:   3'- -GgCGG--CugCGGCuaCUCCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 2840 0.66 0.696668
Target:  5'- aCCGCCGcuacACGgucaCCGuccccGAGGcgcUCGACCGUg -3'
miRNA:   3'- -GGCGGC----UGC----GGCua---CUCC---AGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 3376 0.67 0.594326
Target:  5'- uCCGCCuGCaGCgGAagucUGAGaaGUUGGCCGCg -3'
miRNA:   3'- -GGCGGcUG-CGgCU----ACUC--CAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 3588 0.66 0.696668
Target:  5'- gUCGCUGACGgugaacaguCCGGUGAaaucuacgGcGUCGcCCGCg -3'
miRNA:   3'- -GGCGGCUGC---------GGCUACU--------C-CAGCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 3745 0.69 0.513994
Target:  5'- gCGgCGACGUCGAaggcGAGGgCGGCCuGCu -3'
miRNA:   3'- gGCgGCUGCGGCUa---CUCCaGCUGG-CG- -5'
18286 3' -58.8 NC_004681.1 + 5277 0.66 0.676356
Target:  5'- -gGCgGGCGCgGAcaGGGUCuGACCGUu -3'
miRNA:   3'- ggCGgCUGCGgCUacUCCAG-CUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 5552 0.69 0.475473
Target:  5'- -aGCUGAUGCCGAUGcacccgucacGGGUCG-CCa- -3'
miRNA:   3'- ggCGGCUGCGGCUAC----------UCCAGCuGGcg -5'
18286 3' -58.8 NC_004681.1 + 5662 0.69 0.523827
Target:  5'- uUCGCCGACGac---GAGGUCGugccgauCCGCu -3'
miRNA:   3'- -GGCGGCUGCggcuaCUCCAGCu------GGCG- -5'
18286 3' -58.8 NC_004681.1 + 7367 0.75 0.243557
Target:  5'- gCGCacuCGGCGCCGAgGuGGaCGGCCGCg -3'
miRNA:   3'- gGCG---GCUGCGGCUaCuCCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 7915 0.67 0.594326
Target:  5'- gCCGCCGAggaGCCGGaagaagUGGuGGUCGAagaGCc -3'
miRNA:   3'- -GGCGGCUg--CGGCU------ACU-CCAGCUgg-CG- -5'
18286 3' -58.8 NC_004681.1 + 8293 0.66 0.676357
Target:  5'- gCGCgGACGCCGccaaggacggccuGgacaacgacauccccGAGGUCGAgguCCGCa -3'
miRNA:   3'- gGCGgCUGCGGC-------------Ua--------------CUCCAGCU---GGCG- -5'
18286 3' -58.8 NC_004681.1 + 8570 0.66 0.666141
Target:  5'- -aGCCG-CaGCCGugccGGGGUCaGCCGCc -3'
miRNA:   3'- ggCGGCuG-CGGCua--CUCCAGcUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 8644 0.69 0.494562
Target:  5'- cCCGUCGAa-CCGAaGGGGUucuggccgaUGGCCGCg -3'
miRNA:   3'- -GGCGGCUgcGGCUaCUCCA---------GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 9017 0.68 0.543699
Target:  5'- gCCGuuGACGCCG---GGGUacccGCCGCc -3'
miRNA:   3'- -GGCggCUGCGGCuacUCCAgc--UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 9072 0.66 0.676356
Target:  5'- gCGCCGACagcgaggagGCCGAggaggcggUGAagccGGUCGAaCGCu -3'
miRNA:   3'- gGCGGCUG---------CGGCU--------ACU----CCAGCUgGCG- -5'
18286 3' -58.8 NC_004681.1 + 11350 0.67 0.645637
Target:  5'- uCgGCaagGACGuuGAUGAGGcuggCGACCugGCu -3'
miRNA:   3'- -GgCGg--CUGCggCUACUCCa---GCUGG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.