miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18286 3' -58.8 NC_004681.1 + 12262 0.69 0.484973
Target:  5'- gUGCUGugGCCGAcucccGAGGUCGcCCc- -3'
miRNA:   3'- gGCGGCugCGGCUa----CUCCAGCuGGcg -5'
18286 3' -58.8 NC_004681.1 + 24842 0.7 0.420559
Target:  5'- gCGUCGGCGgCGcgGGcGG-CGGCCGCc -3'
miRNA:   3'- gGCGGCUGCgGCuaCU-CCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 1045 0.7 0.438444
Target:  5'- gUCGCgGACGCCGA-GAGGauguaCGGCC-Cg -3'
miRNA:   3'- -GGCGgCUGCGGCUaCUCCa----GCUGGcG- -5'
18286 3' -58.8 NC_004681.1 + 45117 0.7 0.447549
Target:  5'- -gGCCGACGCCGucgcgcAGGUcuacaccuacaaCGACCGUc -3'
miRNA:   3'- ggCGGCUGCGGCuac---UCCA------------GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 28682 0.7 0.447549
Target:  5'- cCCGCgGGCGCUGAcgUGuucgcgcuGGUCgcauggGACCGCu -3'
miRNA:   3'- -GGCGgCUGCGGCU--ACu-------CCAG------CUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 51318 0.7 0.466066
Target:  5'- uCCGCCGAcgucaucaccguCGCCGcgGAGcUCGGCaaGCa -3'
miRNA:   3'- -GGCGGCU------------GCGGCuaCUCcAGCUGg-CG- -5'
18286 3' -58.8 NC_004681.1 + 5552 0.69 0.475473
Target:  5'- -aGCUGAUGCCGAUGcacccgucacGGGUCG-CCa- -3'
miRNA:   3'- ggCGGCUGCGGCUAC----------UCCAGCuGGcg -5'
18286 3' -58.8 NC_004681.1 + 22380 0.69 0.475473
Target:  5'- uCC-CCGACGUCGAgugGAcgcuGGUCaccccGGCCGCg -3'
miRNA:   3'- -GGcGGCUGCGGCUa--CU----CCAG-----CUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 28355 0.69 0.475473
Target:  5'- aCC-CCGGCGCCGAUGcacuUCGACCu- -3'
miRNA:   3'- -GGcGGCUGCGGCUACucc-AGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 27491 0.71 0.41528
Target:  5'- aCCGCUGAcccugaccuggggcaCGCCucaGAUcGAGGUCGcACCGUc -3'
miRNA:   3'- -GGCGGCU---------------GCGG---CUA-CUCCAGC-UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 62694 0.71 0.403122
Target:  5'- gUCGUCGGCGCCgGAUGAGG-CGGaCGg -3'
miRNA:   3'- -GGCGGCUGCGG-CUACUCCaGCUgGCg -5'
18286 3' -58.8 NC_004681.1 + 61157 0.71 0.377842
Target:  5'- gCCGCCgcGACGCCcaGGgcaacuGGGUCGACgGCg -3'
miRNA:   3'- -GGCGG--CUGCGG--CUac----UCCAGCUGgCG- -5'
18286 3' -58.8 NC_004681.1 + 640 0.74 0.249514
Target:  5'- cCCGgugaUCGACGCCGAUccGGUCGACCu- -3'
miRNA:   3'- -GGC----GGCUGCGGCUAcuCCAGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 65075 0.74 0.249514
Target:  5'- cCCGCUcggGugGUCGccGAGGUCGGCCugGCa -3'
miRNA:   3'- -GGCGG---CugCGGCuaCUCCAGCUGG--CG- -5'
18286 3' -58.8 NC_004681.1 + 51499 0.73 0.285788
Target:  5'- gCCGCCagcucggcuacaccGACGCCaccaccuccGAaGAGGUCGACgCGCu -3'
miRNA:   3'- -GGCGG--------------CUGCGG---------CUaCUCCAGCUG-GCG- -5'
18286 3' -58.8 NC_004681.1 + 32691 0.73 0.287808
Target:  5'- cCCGCCGACGUCgcgcggcuggugGAUGAGGaccUCuuCCGCu -3'
miRNA:   3'- -GGCGGCUGCGG------------CUACUCC---AGcuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 55892 0.73 0.293935
Target:  5'- gCGCCGAagaacaagaacuaCGCCGcgcAGGUCGugCGCg -3'
miRNA:   3'- gGCGGCU-------------GCGGCuacUCCAGCugGCG- -5'
18286 3' -58.8 NC_004681.1 + 21306 0.73 0.315091
Target:  5'- cCCGCUGAagaaggcgaccauCGUCG-UGGacguGGUCGACCGCa -3'
miRNA:   3'- -GGCGGCU-------------GCGGCuACU----CCAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 54859 0.72 0.361591
Target:  5'- aCCgGCUGACGCCa---AGGaCGACCGCg -3'
miRNA:   3'- -GG-CGGCUGCGGcuacUCCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 13706 0.71 0.369656
Target:  5'- aCGCC---GCCGAgauUGAGGUCGACCu- -3'
miRNA:   3'- gGCGGcugCGGCU---ACUCCAGCUGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.