miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18286 3' -58.8 NC_004681.1 + 41069 0.67 0.625088
Target:  5'- gCGCCGcCGCCGAUGuGcUC-ACCGa -3'
miRNA:   3'- gGCGGCuGCGGCUACuCcAGcUGGCg -5'
18286 3' -58.8 NC_004681.1 + 15912 0.67 0.625088
Target:  5'- aUCGCCGugGCCGc---GGUCaaGACCa- -3'
miRNA:   3'- -GGCGGCugCGGCuacuCCAG--CUGGcg -5'
18286 3' -58.8 NC_004681.1 + 23429 0.67 0.622006
Target:  5'- aCCGUCGACcucgGCCacucccgcaguucuGAUG-GGUCGggcGCCGCc -3'
miRNA:   3'- -GGCGGCUG----CGG--------------CUACuCCAGC---UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 25197 0.67 0.614818
Target:  5'- cCUGgCGGCGCUGGcaacgGcGG-CGACCGCu -3'
miRNA:   3'- -GGCgGCUGCGGCUa----CuCCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 12144 0.67 0.614818
Target:  5'- gCCGUCaACGCCGAUGAcaacgaucuggcGGUaGACCa- -3'
miRNA:   3'- -GGCGGcUGCGGCUACU------------CCAgCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 46818 0.67 0.614818
Target:  5'- gCGUCGAUGCCGcgGAaGUUGaaguGCUGCu -3'
miRNA:   3'- gGCGGCUGCGGCuaCUcCAGC----UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 33345 0.67 0.614818
Target:  5'- cCCGCCcgcacaucACGCUGGcUGAGacCGGCCGCg -3'
miRNA:   3'- -GGCGGc-------UGCGGCU-ACUCcaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 2022 0.67 0.614818
Target:  5'- gCgGCCagGugGUCGugGAGGgCGGCCGCa -3'
miRNA:   3'- -GgCGG--CugCGGCuaCUCCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 28228 0.67 0.614818
Target:  5'- uCCGCCGcCGCCGuugcccgcGGGGcCG-UCGCu -3'
miRNA:   3'- -GGCGGCuGCGGCua------CUCCaGCuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 50832 0.67 0.614818
Target:  5'- aCCGCCacccagcuCGCCGAaGAGGUgaagCGccucGCCGCc -3'
miRNA:   3'- -GGCGGcu------GCGGCUaCUCCA----GC----UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 68758 0.67 0.604562
Target:  5'- aCGCC-AgGCCGAaggaguuagaUGAcGGUCGACCa- -3'
miRNA:   3'- gGCGGcUgCGGCU----------ACU-CCAGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 28044 0.67 0.604562
Target:  5'- gCGCUGGCGCUGGcggucGAGGcggUGGCgGCa -3'
miRNA:   3'- gGCGGCUGCGGCUa----CUCCa--GCUGgCG- -5'
18286 3' -58.8 NC_004681.1 + 56007 0.67 0.604562
Target:  5'- -aGCgCGACGCCaagGAGGgCGAccuCCGCa -3'
miRNA:   3'- ggCG-GCUGCGGcuaCUCCaGCU---GGCG- -5'
18286 3' -58.8 NC_004681.1 + 7915 0.67 0.594326
Target:  5'- gCCGCCGAggaGCCGGaagaagUGGuGGUCGAagaGCc -3'
miRNA:   3'- -GGCGGCUg--CGGCU------ACU-CCAGCUgg-CG- -5'
18286 3' -58.8 NC_004681.1 + 38985 0.67 0.594326
Target:  5'- gCGCUggGugGCCGAcGAGGaaggcgucaacgUCGACgGCc -3'
miRNA:   3'- gGCGG--CugCGGCUaCUCC------------AGCUGgCG- -5'
18286 3' -58.8 NC_004681.1 + 12998 0.67 0.594326
Target:  5'- aCCGCUGGCaCCGcgGAcGacgUGGCCGCg -3'
miRNA:   3'- -GGCGGCUGcGGCuaCUcCa--GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 3376 0.67 0.594326
Target:  5'- uCCGCCuGCaGCgGAagucUGAGaaGUUGGCCGCg -3'
miRNA:   3'- -GGCGGcUG-CGgCU----ACUC--CAGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 22587 0.67 0.593303
Target:  5'- uCCGa-GGCGCCGAUGAuGGUgGcguugucGCCGUu -3'
miRNA:   3'- -GGCggCUGCGGCUACU-CCAgC-------UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 35549 0.68 0.584117
Target:  5'- aCGUCuGCGCCGuUGuAGG-CGugCGCa -3'
miRNA:   3'- gGCGGcUGCGGCuAC-UCCaGCugGCG- -5'
18286 3' -58.8 NC_004681.1 + 14398 0.68 0.580043
Target:  5'- aUCGCCGACGCCaagcgcaagcAGG-CGGCCGa -3'
miRNA:   3'- -GGCGGCUGCGGcuac------UCCaGCUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.