miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18286 3' -58.8 NC_004681.1 + 12068 0.67 0.635364
Target:  5'- gCCGCauggaCGAgGCCGAguacguggccGAGGUCcGcCCGCg -3'
miRNA:   3'- -GGCG-----GCUgCGGCUa---------CUCCAG-CuGGCG- -5'
18286 3' -58.8 NC_004681.1 + 12144 0.67 0.614818
Target:  5'- gCCGUCaACGCCGAUGAcaacgaucuggcGGUaGACCa- -3'
miRNA:   3'- -GGCGGcUGCGGCUACU------------CCAgCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 12262 0.69 0.484973
Target:  5'- gUGCUGugGCCGAcucccGAGGUCGcCCc- -3'
miRNA:   3'- gGCGGCugCGGCUa----CUCCAGCuGGcg -5'
18286 3' -58.8 NC_004681.1 + 12555 0.66 0.666141
Target:  5'- aCCGCuCGugGCCG---GGGccUCGACgGUg -3'
miRNA:   3'- -GGCG-GCugCGGCuacUCC--AGCUGgCG- -5'
18286 3' -58.8 NC_004681.1 + 12998 0.67 0.594326
Target:  5'- aCCGCUGGCaCCGcgGAcGacgUGGCCGCg -3'
miRNA:   3'- -GGCGGCUGcGGCuaCUcCa--GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 13706 0.71 0.369656
Target:  5'- aCGCC---GCCGAgauUGAGGUCGACCu- -3'
miRNA:   3'- gGCGGcugCGGCU---ACUCCAGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 13833 0.68 0.563812
Target:  5'- gUCGaaGAUGUCGAUguucuugagggcGAGGUCGACCu- -3'
miRNA:   3'- -GGCggCUGCGGCUA------------CUCCAGCUGGcg -5'
18286 3' -58.8 NC_004681.1 + 14398 0.68 0.580043
Target:  5'- aUCGCCGACGCCaagcgcaagcAGG-CGGCCGa -3'
miRNA:   3'- -GGCGGCUGCGGcuac------UCCaGCUGGCg -5'
18286 3' -58.8 NC_004681.1 + 14630 0.69 0.504238
Target:  5'- aUGCCGACcCCGuUGAGGaUCGACUuCa -3'
miRNA:   3'- gGCGGCUGcGGCuACUCC-AGCUGGcG- -5'
18286 3' -58.8 NC_004681.1 + 14675 0.72 0.361591
Target:  5'- uUGCCGGUGCCGA--AGG-CGACUGCg -3'
miRNA:   3'- gGCGGCUGCGGCUacUCCaGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 15912 0.67 0.625088
Target:  5'- aUCGCCGugGCCGc---GGUCaaGACCa- -3'
miRNA:   3'- -GGCGGCugCGGCuacuCCAG--CUGGcg -5'
18286 3' -58.8 NC_004681.1 + 16569 0.66 0.673296
Target:  5'- uUGCCGACGagcgcuacaagcccCCGgcGuccccGGUCGACCuGCa -3'
miRNA:   3'- gGCGGCUGC--------------GGCuaCu----CCAGCUGG-CG- -5'
18286 3' -58.8 NC_004681.1 + 16716 0.67 0.625088
Target:  5'- cCCGCCGccuccaucGCgGCCugcaguUGcAGGUCGACCGg -3'
miRNA:   3'- -GGCGGC--------UG-CGGcu----AC-UCCAGCUGGCg -5'
18286 3' -58.8 NC_004681.1 + 16936 0.66 0.686535
Target:  5'- gUGCCGGuCGuuGAUGuAGcUCGAcuCCGCg -3'
miRNA:   3'- gGCGGCU-GCggCUAC-UCcAGCU--GGCG- -5'
18286 3' -58.8 NC_004681.1 + 17490 0.72 0.35365
Target:  5'- gCCGUCcauGAUGuuGAcGAGGuccUCGACCGCg -3'
miRNA:   3'- -GGCGG---CUGCggCUaCUCC---AGCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 17786 0.69 0.508131
Target:  5'- aCCGUCGAggcguagucgggagcUGCCGGUGAgagcgGGaUCGaACCGCc -3'
miRNA:   3'- -GGCGGCU---------------GCGGCUACU-----CC-AGC-UGGCG- -5'
18286 3' -58.8 NC_004681.1 + 17944 0.71 0.391191
Target:  5'- aCGCCGggGCGCCcggguuGGUGAGGccggugccuugcgCGGCCGCc -3'
miRNA:   3'- gGCGGC--UGCGG------CUACUCCa------------GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 18193 0.7 0.420559
Target:  5'- gCGCCGAUGCCGggGAuGcCGAugcccauacCCGCg -3'
miRNA:   3'- gGCGGCUGCGGCuaCUcCaGCU---------GGCG- -5'
18286 3' -58.8 NC_004681.1 + 18396 0.69 0.523826
Target:  5'- gCUGCUGAcCGCCaGUcGAGGacugCGGCCGUg -3'
miRNA:   3'- -GGCGGCU-GCGGcUA-CUCCa---GCUGGCG- -5'
18286 3' -58.8 NC_004681.1 + 19467 0.76 0.200071
Target:  5'- gUCGCCcAgGCCGGUGuGGUCGACC-Cg -3'
miRNA:   3'- -GGCGGcUgCGGCUACuCCAGCUGGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.