Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18287 | 3' | -59 | NC_004681.1 | + | 25591 | 1.1 | 0.000645 |
Target: 5'- cCCCGCUGAGCGACCAACCCAGUCCCAc -3' miRNA: 3'- -GGGCGACUCGCUGGUUGGGUCAGGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 444 | 0.76 | 0.16888 |
Target: 5'- cUCCGCUGGGCGuCCAACCUGG-CCgAg -3' miRNA: 3'- -GGGCGACUCGCuGGUUGGGUCaGGgU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 67715 | 0.73 | 0.240756 |
Target: 5'- gCCGCUG-GCGcuaccgcaugGCCAACCUGGUCUCGu -3' miRNA: 3'- gGGCGACuCGC----------UGGUUGGGUCAGGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 1639 | 0.71 | 0.336424 |
Target: 5'- gCCCaGCUGAa-GGCUGGCCCGGUCaCCAg -3' miRNA: 3'- -GGG-CGACUcgCUGGUUGGGUCAG-GGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 26964 | 0.7 | 0.36841 |
Target: 5'- gCCGCcauagguggcggUGGG-GACCGGCCCacugcGGUCCCAg -3' miRNA: 3'- gGGCG------------ACUCgCUGGUUGGG-----UCAGGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 51836 | 0.7 | 0.411229 |
Target: 5'- gCCCGCgccgGGGCGGCCGccgacgACCaccaGGUUCCc -3' miRNA: 3'- -GGGCGa---CUCGCUGGU------UGGg---UCAGGGu -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 47112 | 0.69 | 0.420156 |
Target: 5'- gCCGCUGAGCGACgAgaacGCCgAGggCCGc -3' miRNA: 3'- gGGCGACUCGCUGgU----UGGgUCagGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 18243 | 0.69 | 0.426475 |
Target: 5'- uUCCGUUGGGCguggggaacgggccGACCuGACCCGGUgCCu -3' miRNA: 3'- -GGGCGACUCG--------------CUGG-UUGGGUCAgGGu -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 12968 | 0.69 | 0.4292 |
Target: 5'- aCCCGC--AGCGGCCGuaguGCCCGacGUaCCCAg -3' miRNA: 3'- -GGGCGacUCGCUGGU----UGGGU--CA-GGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 3219 | 0.69 | 0.447625 |
Target: 5'- gCCGCUGGGCGcgcgauCCGAUCaggUAGUCCUg -3' miRNA: 3'- gGGCGACUCGCu-----GGUUGG---GUCAGGGu -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 9378 | 0.69 | 0.457 |
Target: 5'- uCCCGCUGGGC-ACCAuCCUGGUgggCCAc -3' miRNA: 3'- -GGGCGACUCGcUGGUuGGGUCAg--GGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 68672 | 0.69 | 0.457001 |
Target: 5'- gCCCGCUGucgcuccaGGCGuGCCAGCaagUAGUCCUg -3' miRNA: 3'- -GGGCGAC--------UCGC-UGGUUGg--GUCAGGGu -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 22675 | 0.68 | 0.466481 |
Target: 5'- gCCGUUGAuGCGGCUggcGACCCAGaCCa- -3' miRNA: 3'- gGGCGACU-CGCUGG---UUGGGUCaGGgu -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 22830 | 0.68 | 0.482826 |
Target: 5'- aCCCGaguGGCGGCCGugCCGGUguucugggucugugCCCAc -3' miRNA: 3'- -GGGCgacUCGCUGGUugGGUCA--------------GGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 10240 | 0.68 | 0.519308 |
Target: 5'- uUCGCUGcgGGUGACCuacacccacggcuacAACCCGGUgCCGg -3' miRNA: 3'- gGGCGAC--UCGCUGG---------------UUGGGUCAgGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 28602 | 0.67 | 0.525329 |
Target: 5'- aCCGCggGGGUGcCCGgggugagugugaGCCCAGcCCCGg -3' miRNA: 3'- gGGCGa-CUCGCuGGU------------UGGGUCaGGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 74028 | 0.67 | 0.529358 |
Target: 5'- gCCCGCUGGGCugagcugagcgcuccGugCGcguACCCAGUaaaUCCGg -3' miRNA: 3'- -GGGCGACUCG---------------CugGU---UGGGUCA---GGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 48803 | 0.67 | 0.535422 |
Target: 5'- aCCGC-GGGCGACUcgaagccgAACUCGG-CCCAu -3' miRNA: 3'- gGGCGaCUCGCUGG--------UUGGGUCaGGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 12882 | 0.67 | 0.555803 |
Target: 5'- gCCGCUGcgGGUGACCAcACCCAca-CCGg -3' miRNA: 3'- gGGCGAC--UCGCUGGU-UGGGUcagGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 64949 | 0.66 | 0.586769 |
Target: 5'- aCCaGCUGGgugaggucGCGGCgCAGguaCCAGUCCCAc -3' miRNA: 3'- gGG-CGACU--------CGCUG-GUUg--GGUCAGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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