Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18287 | 3' | -59 | NC_004681.1 | + | 444 | 0.76 | 0.16888 |
Target: 5'- cUCCGCUGGGCGuCCAACCUGG-CCgAg -3' miRNA: 3'- -GGGCGACUCGCuGGUUGGGUCaGGgU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 62372 | 0.66 | 0.638959 |
Target: 5'- aUCGCaUGAGCGA---GCCCAuUCCCGg -3' miRNA: 3'- gGGCG-ACUCGCUgguUGGGUcAGGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 39784 | 0.66 | 0.6285 |
Target: 5'- gCCCGCcGcGCGACCAucGCC---UCCCAc -3' miRNA: 3'- -GGGCGaCuCGCUGGU--UGGgucAGGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 65898 | 0.66 | 0.6285 |
Target: 5'- cCUCGCgcaugauccUGGGCGACCG-CaaGGUCCCu -3' miRNA: 3'- -GGGCG---------ACUCGCUGGUuGggUCAGGGu -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 34627 | 0.66 | 0.616997 |
Target: 5'- gCCC-UUGGGUGAcacguuCCAgccguuguuguuuGCCCAGUCCCu -3' miRNA: 3'- -GGGcGACUCGCU------GGU-------------UGGGUCAGGGu -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 29177 | 0.66 | 0.607596 |
Target: 5'- aCCC-CUGGGCGGCCAucaCAaUCCCu -3' miRNA: 3'- -GGGcGACUCGCUGGUuggGUcAGGGu -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 10649 | 0.66 | 0.607596 |
Target: 5'- aCCGCUGccuGGCG-CC--CCCGGUgCCCGc -3' miRNA: 3'- gGGCGAC---UCGCuGGuuGGGUCA-GGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 7860 | 0.66 | 0.607596 |
Target: 5'- gCCCGCUGA-CGAagAGCCCGcgCCCGu -3' miRNA: 3'- -GGGCGACUcGCUggUUGGGUcaGGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 50453 | 0.66 | 0.597169 |
Target: 5'- aCCaCGUcgUGGGCGAcgcccaccCCGACCguGUCCUg -3' miRNA: 3'- -GG-GCG--ACUCGCU--------GGUUGGguCAGGGu -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 67715 | 0.73 | 0.240756 |
Target: 5'- gCCGCUG-GCGcuaccgcaugGCCAACCUGGUCUCGu -3' miRNA: 3'- gGGCGACuCGC----------UGGUUGGGUCAGGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 47112 | 0.69 | 0.420156 |
Target: 5'- gCCGCUGAGCGACgAgaacGCCgAGggCCGc -3' miRNA: 3'- gGGCGACUCGCUGgU----UGGgUCagGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 9378 | 0.69 | 0.457 |
Target: 5'- uCCCGCUGGGC-ACCAuCCUGGUgggCCAc -3' miRNA: 3'- -GGGCGACUCGcUGGUuGGGUCAg--GGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 10240 | 0.68 | 0.519308 |
Target: 5'- uUCGCUGcgGGUGACCuacacccacggcuacAACCCGGUgCCGg -3' miRNA: 3'- gGGCGAC--UCGCUGG---------------UUGGGUCAgGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 74028 | 0.67 | 0.529358 |
Target: 5'- gCCCGCUGGGCugagcugagcgcuccGugCGcguACCCAGUaaaUCCGg -3' miRNA: 3'- -GGGCGACUCG---------------CugGU---UGGGUCA---GGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 12882 | 0.67 | 0.555803 |
Target: 5'- gCCGCUGcgGGUGACCAcACCCAca-CCGg -3' miRNA: 3'- gGGCGAC--UCGCUGGU-UGGGUcagGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 29572 | 0.66 | 0.618043 |
Target: 5'- uCCCGgUGAgggacaggGUGACCGACUCAccgCCCGu -3' miRNA: 3'- -GGGCgACU--------CGCUGGUUGGGUca-GGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 1639 | 0.71 | 0.336424 |
Target: 5'- gCCCaGCUGAa-GGCUGGCCCGGUCaCCAg -3' miRNA: 3'- -GGG-CGACUcgCUGGUUGGGUCAG-GGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 26964 | 0.7 | 0.36841 |
Target: 5'- gCCGCcauagguggcggUGGG-GACCGGCCCacugcGGUCCCAg -3' miRNA: 3'- gGGCG------------ACUCgCUGGUUGGG-----UCAGGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 51836 | 0.7 | 0.411229 |
Target: 5'- gCCCGCgccgGGGCGGCCGccgacgACCaccaGGUUCCc -3' miRNA: 3'- -GGGCGa---CUCGCUGGU------UGGg---UCAGGGu -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 18243 | 0.69 | 0.426475 |
Target: 5'- uUCCGUUGGGCguggggaacgggccGACCuGACCCGGUgCCu -3' miRNA: 3'- -GGGCGACUCG--------------CUGG-UUGGGUCAgGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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