Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18306 | 3' | -54.2 | NC_004681.1 | + | 40471 | 0.66 | 0.81432 |
Target: 5'- -gGCGGU-GCCGCu-CUUGCUG-GCg -3' miRNA: 3'- cgCGCCAgUGGUGuuGAACGACuCGa -5' |
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18306 | 3' | -54.2 | NC_004681.1 | + | 58796 | 0.66 | 0.804939 |
Target: 5'- gGCGCGcG-C-CCAgGAgUUGCUGGGCc -3' miRNA: 3'- -CGCGC-CaGuGGUgUUgAACGACUCGa -5' |
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18306 | 3' | -54.2 | NC_004681.1 | + | 57465 | 0.66 | 0.833393 |
Target: 5'- cGCGCGGUCccuggagcucauccuCUACGGCgaGCgugaGAGCg -3' miRNA: 3'- -CGCGCCAGu--------------GGUGUUGaaCGa---CUCGa -5' |
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18306 | 3' | -54.2 | NC_004681.1 | + | 50530 | 0.66 | 0.841291 |
Target: 5'- gGCaCGGagAUCGCGG-UUGCUGAGCg -3' miRNA: 3'- -CGcGCCagUGGUGUUgAACGACUCGa -5' |
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18306 | 3' | -54.2 | NC_004681.1 | + | 62001 | 0.66 | 0.84986 |
Target: 5'- uCGCGGU-GCCACAGCgccaacugGUUGAgGCa -3' miRNA: 3'- cGCGCCAgUGGUGUUGaa------CGACU-CGa -5' |
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18306 | 3' | -54.2 | NC_004681.1 | + | 36578 | 0.66 | 0.832505 |
Target: 5'- cCGUaga-ACCACgGGCUUGCUGAGCUc -3' miRNA: 3'- cGCGccagUGGUG-UUGAACGACUCGA- -5' |
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18306 | 3' | -54.2 | NC_004681.1 | + | 30188 | 0.66 | 0.804939 |
Target: 5'- cCGUGGUUGuCaCACAugUgcgGCUGAGCc -3' miRNA: 3'- cGCGCCAGU-G-GUGUugAa--CGACUCGa -5' |
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18306 | 3' | -54.2 | NC_004681.1 | + | 20038 | 0.66 | 0.81432 |
Target: 5'- cCGCGGggagCACCu--GCgUGUUGAGCa -3' miRNA: 3'- cGCGCCa---GUGGuguUGaACGACUCGa -5' |
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18306 | 3' | -54.2 | NC_004681.1 | + | 21228 | 0.66 | 0.84986 |
Target: 5'- -aGUGGggacCACCACAAUggGCgucaUGAGCg -3' miRNA: 3'- cgCGCCa---GUGGUGUUGaaCG----ACUCGa -5' |
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18306 | 3' | -54.2 | NC_004681.1 | + | 72236 | 0.66 | 0.832505 |
Target: 5'- aGCGCaacgugaucgaaGGUCGCaACggUgagGCUGGGCUg -3' miRNA: 3'- -CGCG------------CCAGUGgUGuuGaa-CGACUCGA- -5' |
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18306 | 3' | -54.2 | NC_004681.1 | + | 42453 | 0.66 | 0.81432 |
Target: 5'- uGCGCGG-CACuUGCGGCUggugGCauugGAGCg -3' miRNA: 3'- -CGCGCCaGUG-GUGUUGAa---CGa---CUCGa -5' |
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18306 | 3' | -54.2 | NC_004681.1 | + | 3496 | 0.67 | 0.764727 |
Target: 5'- cGCGCGGgCGCCGCGgccaacuucucagACUUccGCUGcaGGCg -3' miRNA: 3'- -CGCGCCaGUGGUGU-------------UGAA--CGAC--UCGa -5' |
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18306 | 3' | -54.2 | NC_004681.1 | + | 31552 | 0.67 | 0.794415 |
Target: 5'- uUGCGGUCAggccguCCGCAgaguucaugucgcACUUGCcgaaggGAGCUg -3' miRNA: 3'- cGCGCCAGU------GGUGU-------------UGAACGa-----CUCGA- -5' |
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18306 | 3' | -54.2 | NC_004681.1 | + | 19618 | 0.67 | 0.79538 |
Target: 5'- gGCGUGGUCgAUgACGGCgagGgUGGGCa -3' miRNA: 3'- -CGCGCCAG-UGgUGUUGaa-CgACUCGa -5' |
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18306 | 3' | -54.2 | NC_004681.1 | + | 14496 | 0.67 | 0.79538 |
Target: 5'- cGCGCuGGUgGCCGguGCUgGCgcGAGCa -3' miRNA: 3'- -CGCG-CCAgUGGUguUGAaCGa-CUCGa -5' |
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18306 | 3' | -54.2 | NC_004681.1 | + | 14223 | 0.67 | 0.775768 |
Target: 5'- gGCGCua-CGCCGCuACcagGCUGAGCUg -3' miRNA: 3'- -CGCGccaGUGGUGuUGaa-CGACUCGA- -5' |
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18306 | 3' | -54.2 | NC_004681.1 | + | 44938 | 0.67 | 0.765737 |
Target: 5'- aCGCGGUggagcCGCCACcGCgaGCUcGGGCUc -3' miRNA: 3'- cGCGCCA-----GUGGUGuUGaaCGA-CUCGA- -5' |
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18306 | 3' | -54.2 | NC_004681.1 | + | 67479 | 0.68 | 0.744244 |
Target: 5'- aGCGCGGugagcgggacgauUCugUACGGCcUGCUGcGCg -3' miRNA: 3'- -CGCGCC-------------AGugGUGUUGaACGACuCGa -5' |
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18306 | 3' | -54.2 | NC_004681.1 | + | 19826 | 0.68 | 0.734876 |
Target: 5'- uGCGCGGUgACCcCGGCUucgaggUGCUGucCUa -3' miRNA: 3'- -CGCGCCAgUGGuGUUGA------ACGACucGA- -5' |
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18306 | 3' | -54.2 | NC_004681.1 | + | 21884 | 0.68 | 0.72437 |
Target: 5'- cGCGCGGUUAUCACAGCgucc--AGCUc -3' miRNA: 3'- -CGCGCCAGUGGUGUUGaacgacUCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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