miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18306 3' -54.2 NC_004681.1 + 35112 1.09 0.001708
Target:  5'- uGCGCGGUCACCACAACUUGCUGAGCUc -3'
miRNA:   3'- -CGCGCCAGUGGUGUUGAACGACUCGA- -5'
18306 3' -54.2 NC_004681.1 + 17909 0.73 0.410537
Target:  5'- uGCGCGGcCGCCGCGuugaugucgGCcUGCgUGGGCUg -3'
miRNA:   3'- -CGCGCCaGUGGUGU---------UGaACG-ACUCGA- -5'
18306 3' -54.2 NC_004681.1 + 5964 0.72 0.509036
Target:  5'- cGCGCGGUCGaacuguUCGCGcagGCgcUGCUGAGCc -3'
miRNA:   3'- -CGCGCCAGU------GGUGU---UGa-ACGACUCGa -5'
18306 3' -54.2 NC_004681.1 + 58672 0.71 0.529958
Target:  5'- cGCGCGGUCuCCGCAucgaGCUUgacGCUG-GCc -3'
miRNA:   3'- -CGCGCCAGuGGUGU----UGAA---CGACuCGa -5'
18306 3' -54.2 NC_004681.1 + 8379 0.7 0.627063
Target:  5'- cGCGCGGUCAUCAUGAacccg-GAGCUc -3'
miRNA:   3'- -CGCGCCAGUGGUGUUgaacgaCUCGA- -5'
18306 3' -54.2 NC_004681.1 + 28408 0.69 0.659824
Target:  5'- -gGCGGUCACCcCGGCUcccGCggagaugGAGCUc -3'
miRNA:   3'- cgCGCCAGUGGuGUUGAa--CGa------CUCGA- -5'
18306 3' -54.2 NC_004681.1 + 39189 0.69 0.670707
Target:  5'- cGCGCaGGUgGCCACcagGGCUUGCacGGCg -3'
miRNA:   3'- -CGCG-CCAgUGGUG---UUGAACGacUCGa -5'
18306 3' -54.2 NC_004681.1 + 8468 0.69 0.692355
Target:  5'- -gGCGGcugacccCGgCACGGCUgcgGCUGAGCUg -3'
miRNA:   3'- cgCGCCa------GUgGUGUUGAa--CGACUCGA- -5'
18306 3' -54.2 NC_004681.1 + 6043 0.68 0.703099
Target:  5'- cCGCGGUCaACUGCAGCggaaUGGGCUc -3'
miRNA:   3'- cGCGCCAG-UGGUGUUGaacgACUCGA- -5'
18306 3' -54.2 NC_004681.1 + 33682 0.68 0.713774
Target:  5'- cGCGCGcGUgACCGCAugUa-CUGGGCc -3'
miRNA:   3'- -CGCGC-CAgUGGUGUugAacGACUCGa -5'
18306 3' -54.2 NC_004681.1 + 21884 0.68 0.72437
Target:  5'- cGCGCGGUUAUCACAGCgucc--AGCUc -3'
miRNA:   3'- -CGCGCCAGUGGUGUUGaacgacUCGA- -5'
18306 3' -54.2 NC_004681.1 + 19826 0.68 0.734876
Target:  5'- uGCGCGGUgACCcCGGCUucgaggUGCUGucCUa -3'
miRNA:   3'- -CGCGCCAgUGGuGUUGA------ACGACucGA- -5'
18306 3' -54.2 NC_004681.1 + 67479 0.68 0.744244
Target:  5'- aGCGCGGugagcgggacgauUCugUACGGCcUGCUGcGCg -3'
miRNA:   3'- -CGCGCC-------------AGugGUGUUGaACGACuCGa -5'
18306 3' -54.2 NC_004681.1 + 9317 0.68 0.74528
Target:  5'- cGCGCGGguucaUCACCACAGCguucgGGGUc -3'
miRNA:   3'- -CGCGCC-----AGUGGUGUUGaacgaCUCGa -5'
18306 3' -54.2 NC_004681.1 + 3496 0.67 0.764727
Target:  5'- cGCGCGGgCGCCGCGgccaacuucucagACUUccGCUGcaGGCg -3'
miRNA:   3'- -CGCGCCaGUGGUGU-------------UGAA--CGAC--UCGa -5'
18306 3' -54.2 NC_004681.1 + 44938 0.67 0.765737
Target:  5'- aCGCGGUggagcCGCCACcGCgaGCUcGGGCUc -3'
miRNA:   3'- cGCGCCA-----GUGGUGuUGaaCGA-CUCGA- -5'
18306 3' -54.2 NC_004681.1 + 14223 0.67 0.775768
Target:  5'- gGCGCua-CGCCGCuACcagGCUGAGCUg -3'
miRNA:   3'- -CGCGccaGUGGUGuUGaa-CGACUCGA- -5'
18306 3' -54.2 NC_004681.1 + 31552 0.67 0.794415
Target:  5'- uUGCGGUCAggccguCCGCAgaguucaugucgcACUUGCcgaaggGAGCUg -3'
miRNA:   3'- cGCGCCAGU------GGUGU-------------UGAACGa-----CUCGA- -5'
18306 3' -54.2 NC_004681.1 + 14496 0.67 0.79538
Target:  5'- cGCGCuGGUgGCCGguGCUgGCgcGAGCa -3'
miRNA:   3'- -CGCG-CCAgUGGUguUGAaCGa-CUCGa -5'
18306 3' -54.2 NC_004681.1 + 19618 0.67 0.79538
Target:  5'- gGCGUGGUCgAUgACGGCgagGgUGGGCa -3'
miRNA:   3'- -CGCGCCAG-UGgUGUUGaa-CgACUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.