miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18331 5' -62.4 NC_004681.1 + 19026 0.66 0.44263
Target:  5'- uUCUGCgcuCCCGCGAcgggagccuGGGGaCCGGCc -3'
miRNA:   3'- -AGGCGac-GGGCGCUu--------CCCCaGGUCGu -5'
18331 5' -62.4 NC_004681.1 + 13125 0.66 0.441715
Target:  5'- cCCGCUGCCCGCcaccgcccuucguGGcacGGcGGGUaCgGGCGg -3'
miRNA:   3'- aGGCGACGGGCG-------------CU---UC-CCCA-GgUCGU- -5'
18331 5' -62.4 NC_004681.1 + 22719 0.66 0.424547
Target:  5'- -gCGCUGCCCGCGGuguccguggagaAGGaGG-UgGGCAc -3'
miRNA:   3'- agGCGACGGGCGCU------------UCC-CCaGgUCGU- -5'
18331 5' -62.4 NC_004681.1 + 44850 0.66 0.424547
Target:  5'- --aGCcGCCCGCGAGGGaGUCCucgacgucgaaGGCGc -3'
miRNA:   3'- aggCGaCGGGCGCUUCCcCAGG-----------UCGU- -5'
18331 5' -62.4 NC_004681.1 + 44228 0.66 0.406912
Target:  5'- --gGCcagGCCCGCGGccucGGGGGUgaGGCAg -3'
miRNA:   3'- aggCGa--CGGGCGCU----UCCCCAggUCGU- -5'
18331 5' -62.4 NC_004681.1 + 48706 0.66 0.399989
Target:  5'- uUCgGCUucgagucGCCCGCGGucaacgagcugcgcuGGGucuccuuGGUCCAGCAc -3'
miRNA:   3'- -AGgCGA-------CGGGCGCU---------------UCC-------CCAGGUCGU- -5'
18331 5' -62.4 NC_004681.1 + 12071 0.66 0.398269
Target:  5'- -gCGgUGCCCaCGAGGGGacguucUCCAGCGg -3'
miRNA:   3'- agGCgACGGGcGCUUCCCc-----AGGUCGU- -5'
18331 5' -62.4 NC_004681.1 + 22501 0.67 0.364899
Target:  5'- gUUGCcGUCCGCGGccGGGGUgaCCAGCGu -3'
miRNA:   3'- aGGCGaCGGGCGCUu-CCCCA--GGUCGU- -5'
18331 5' -62.4 NC_004681.1 + 26344 0.67 0.356863
Target:  5'- gUCCGUcaUGCCCcaccGCGuAGGGGG-CgGGCAu -3'
miRNA:   3'- -AGGCG--ACGGG----CGC-UUCCCCaGgUCGU- -5'
18331 5' -62.4 NC_004681.1 + 3466 0.68 0.341169
Target:  5'- uUCCGCUGCaggcggaaCgGUGAcaugucggaguAGGcGGUCCAGCu -3'
miRNA:   3'- -AGGCGACG--------GgCGCU-----------UCC-CCAGGUCGu -5'
18331 5' -62.4 NC_004681.1 + 366 0.69 0.28615
Target:  5'- aUCCGCgaggacgaGCCCGCGGucaagaccuggggcaAGGGcaCCGGCAc -3'
miRNA:   3'- -AGGCGa-------CGGGCGCU---------------UCCCcaGGUCGU- -5'
18331 5' -62.4 NC_004681.1 + 28219 0.7 0.245445
Target:  5'- gCCGUUGCCCGCGggGccgucgcuGGUCCcGUu -3'
miRNA:   3'- aGGCGACGGGCGCuuCc-------CCAGGuCGu -5'
18331 5' -62.4 NC_004681.1 + 61017 1.08 0.000372
Target:  5'- uUCCGCUGCCCGCGAAGGGGUCCAGCAc -3'
miRNA:   3'- -AGGCGACGGGCGCUUCCCCAGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.