miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18338 3' -59.3 NC_004681.1 + 18373 0.68 0.493659
Target:  5'- uGCGGCCGUgC-CGCgCCCGGAgu-UGCc -3'
miRNA:   3'- -CGCCGGUAgGaGCG-GGGUCUgguACG- -5'
18338 3' -59.3 NC_004681.1 + 18395 0.71 0.310842
Target:  5'- gGCGGCCGcggcggcaaacgCCuUCGCaCCCGGAUCggGCa -3'
miRNA:   3'- -CGCCGGUa-----------GG-AGCG-GGGUCUGGuaCG- -5'
18338 3' -59.3 NC_004681.1 + 18479 0.69 0.409503
Target:  5'- cGCGGCCGccgCCUgGCCU---GCCAUGUc -3'
miRNA:   3'- -CGCCGGUa--GGAgCGGGgucUGGUACG- -5'
18338 3' -59.3 NC_004681.1 + 18833 0.71 0.305043
Target:  5'- cGCGGCCucgccgCCgUCGCCCUuGGCgAUGUu -3'
miRNA:   3'- -CGCCGGua----GG-AGCGGGGuCUGgUACG- -5'
18338 3' -59.3 NC_004681.1 + 19888 0.67 0.543695
Target:  5'- gGCGGCCGUUCUUagcggaGCCgCAcACCA-GCg -3'
miRNA:   3'- -CGCCGGUAGGAG------CGGgGUcUGGUaCG- -5'
18338 3' -59.3 NC_004681.1 + 20047 0.68 0.474233
Target:  5'- gGUGGCCGcgcuaCCUCuGCUaCGGACCcgGCa -3'
miRNA:   3'- -CGCCGGUa----GGAG-CGGgGUCUGGuaCG- -5'
18338 3' -59.3 NC_004681.1 + 20131 0.67 0.523454
Target:  5'- cGCGGCCA-CC-CGUCCUGGuCUccGCg -3'
miRNA:   3'- -CGCCGGUaGGaGCGGGGUCuGGuaCG- -5'
18338 3' -59.3 NC_004681.1 + 23864 0.68 0.478088
Target:  5'- aGCGGCCugacgGacacgauugacgacaUCCgcggaCGCaUCCAGGCCAUGCu -3'
miRNA:   3'- -CGCCGG-----U---------------AGGa----GCG-GGGUCUGGUACG- -5'
18338 3' -59.3 NC_004681.1 + 25779 0.66 0.594235
Target:  5'- -aGGCCGacgCCUgGCCCCGccccuguGGCCAUa- -3'
miRNA:   3'- cgCCGGUa--GGAgCGGGGU-------CUGGUAcg -5'
18338 3' -59.3 NC_004681.1 + 26652 0.69 0.409503
Target:  5'- --cGCCGaacUCCUUGUCCCGGGCUcuAUGCc -3'
miRNA:   3'- cgcCGGU---AGGAGCGGGGUCUGG--UACG- -5'
18338 3' -59.3 NC_004681.1 + 29518 0.7 0.365953
Target:  5'- -aGGCgA-CCUCGCCagugacgCCAGACCAcGCg -3'
miRNA:   3'- cgCCGgUaGGAGCGG-------GGUCUGGUaCG- -5'
18338 3' -59.3 NC_004681.1 + 30048 0.66 0.605707
Target:  5'- cGCGGCCAUCg--GCCUCGGAgCucccGCu -3'
miRNA:   3'- -CGCCGGUAGgagCGGGGUCUgGua--CG- -5'
18338 3' -59.3 NC_004681.1 + 30249 0.66 0.616157
Target:  5'- cGCGGCCGcgccgCCUgagccCGaCCCaCAGGCCGccuUGUa -3'
miRNA:   3'- -CGCCGGUa----GGA-----GC-GGG-GUCUGGU---ACG- -5'
18338 3' -59.3 NC_004681.1 + 30673 0.67 0.502519
Target:  5'- cGCGGUCAagCUCGCCuuCCAucacggcccugguGGCgGUGCg -3'
miRNA:   3'- -CGCCGGUagGAGCGG--GGU-------------CUGgUACG- -5'
18338 3' -59.3 NC_004681.1 + 30869 0.66 0.564186
Target:  5'- cGCGGCCGUuggugaccaggcCCUUggaGCCCgCGGACUcgaugagcAUGCc -3'
miRNA:   3'- -CGCCGGUA------------GGAG---CGGG-GUCUGG--------UACG- -5'
18338 3' -59.3 NC_004681.1 + 30942 0.72 0.274636
Target:  5'- gGCGuGCCGUCCUCcacgauggguccggGCagguaggCCCAGGCCGUGg -3'
miRNA:   3'- -CGC-CGGUAGGAG--------------CG-------GGGUCUGGUACg -5'
18338 3' -59.3 NC_004681.1 + 35362 0.69 0.392041
Target:  5'- gGCGGCCucAUCCUCGCUgcguCCAaGCCAccgGUg -3'
miRNA:   3'- -CGCCGG--UAGGAGCGG----GGUcUGGUa--CG- -5'
18338 3' -59.3 NC_004681.1 + 36808 0.67 0.503508
Target:  5'- -aGGCaGUCCucuuugUCGCCgCGGGCCGUGg -3'
miRNA:   3'- cgCCGgUAGG------AGCGGgGUCUGGUACg -5'
18338 3' -59.3 NC_004681.1 + 37065 0.66 0.574509
Target:  5'- gGUGGCuCAUCCcagCgGCCUCAGaACCA-GCc -3'
miRNA:   3'- -CGCCG-GUAGGa--G-CGGGGUC-UGGUaCG- -5'
18338 3' -59.3 NC_004681.1 + 38652 0.68 0.455198
Target:  5'- uGgGGCCuucugCCUCGCaCCCGcucuGACCA-GCc -3'
miRNA:   3'- -CgCCGGua---GGAGCG-GGGU----CUGGUaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.