miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18338 3' -59.3 NC_004681.1 + 461 0.73 0.227899
Target:  5'- cGCgGGCuCGUCCUCGCggauggcgCCCAuGACgGUGCa -3'
miRNA:   3'- -CG-CCG-GUAGGAGCG--------GGGU-CUGgUACG- -5'
18338 3' -59.3 NC_004681.1 + 1103 0.68 0.455198
Target:  5'- -aGGCCAUCUacgagCGCCUCaAGGCCAUc- -3'
miRNA:   3'- cgCCGGUAGGa----GCGGGG-UCUGGUAcg -5'
18338 3' -59.3 NC_004681.1 + 1392 0.75 0.190979
Target:  5'- uCGGCCAg-CUCGUCCCAGACUuccuggGCg -3'
miRNA:   3'- cGCCGGUagGAGCGGGGUCUGGua----CG- -5'
18338 3' -59.3 NC_004681.1 + 5887 0.67 0.552888
Target:  5'- gGCGGCCAgcguucuUCCacaUCGCCgCGGugGCguUGCg -3'
miRNA:   3'- -CGCCGGU-------AGG---AGCGGgGUC--UGguACG- -5'
18338 3' -59.3 NC_004681.1 + 6607 0.67 0.513441
Target:  5'- cGCGGCUcgGUCUUC-CCCgAGuCCGUGg -3'
miRNA:   3'- -CGCCGG--UAGGAGcGGGgUCuGGUACg -5'
18338 3' -59.3 NC_004681.1 + 6707 0.66 0.616157
Target:  5'- cGCGaaGCCcuugauGUCCUUGCCgCGGcCCAUGg -3'
miRNA:   3'- -CGC--CGG------UAGGAGCGGgGUCuGGUACg -5'
18338 3' -59.3 NC_004681.1 + 7263 0.7 0.350565
Target:  5'- cGCGGCCGUCCa--CCUCGGcGCCgaGUGCg -3'
miRNA:   3'- -CGCCGGUAGGagcGGGGUC-UGG--UACG- -5'
18338 3' -59.3 NC_004681.1 + 7775 0.66 0.592153
Target:  5'- -aGGCCcgCCUCGaaggacugcucaacCCCCAGACUc--- -3'
miRNA:   3'- cgCCGGuaGGAGC--------------GGGGUCUGGuacg -5'
18338 3' -59.3 NC_004681.1 + 9416 0.71 0.310842
Target:  5'- uCGGUCAUCCagaccgcUCGCCgCGagggcguGACCAUGCa -3'
miRNA:   3'- cGCCGGUAGG-------AGCGGgGU-------CUGGUACG- -5'
18338 3' -59.3 NC_004681.1 + 9951 0.67 0.503508
Target:  5'- uGCGGUgggccgguuCGUCUUCGCCUUGcGGCCGcUGCg -3'
miRNA:   3'- -CGCCG---------GUAGGAGCGGGGU-CUGGU-ACG- -5'
18338 3' -59.3 NC_004681.1 + 10102 0.67 0.553913
Target:  5'- gGCGacGUCGUCCUCGa-CCAGAUCGaacuUGCg -3'
miRNA:   3'- -CGC--CGGUAGGAGCggGGUCUGGU----ACG- -5'
18338 3' -59.3 NC_004681.1 + 11858 0.69 0.436583
Target:  5'- aGCGGCCAccggggaagUCCUCGCUCaGGAggGUGUc -3'
miRNA:   3'- -CGCCGGU---------AGGAGCGGGgUCUggUACG- -5'
18338 3' -59.3 NC_004681.1 + 12173 0.66 0.564186
Target:  5'- uCGGCCAcguaCUCGgCCUcGuCCAUGCg -3'
miRNA:   3'- cGCCGGUag--GAGCgGGGuCuGGUACG- -5'
18338 3' -59.3 NC_004681.1 + 13102 0.7 0.375072
Target:  5'- cGCGGCCA-CgUCGUCCgCGGuGCCA-GCg -3'
miRNA:   3'- -CGCCGGUaGgAGCGGG-GUC-UGGUaCG- -5'
18338 3' -59.3 NC_004681.1 + 14523 0.66 0.595277
Target:  5'- gGCGGCguagAUUUUCGCCUCGG-CCGccUGCu -3'
miRNA:   3'- -CGCCGg---UAGGAGCGGGGUCuGGU--ACG- -5'
18338 3' -59.3 NC_004681.1 + 16153 0.67 0.502519
Target:  5'- gGCGGCCAUCCcgUCGCucaucgcgcuguCCUcGGCCAUcuucaugGCa -3'
miRNA:   3'- -CGCCGGUAGG--AGCG------------GGGuCUGGUA-------CG- -5'
18338 3' -59.3 NC_004681.1 + 16394 0.73 0.239506
Target:  5'- uCGGCCA-CCUC-CaagggugaCCAGGCCAUGCg -3'
miRNA:   3'- cGCCGGUaGGAGcGg-------GGUCUGGUACG- -5'
18338 3' -59.3 NC_004681.1 + 17494 0.66 0.596319
Target:  5'- gGCGGCCGUCCaugauguugacgagGUCCUcGACCGcGCu -3'
miRNA:   3'- -CGCCGGUAGGag------------CGGGGuCUGGUaCG- -5'
18338 3' -59.3 NC_004681.1 + 17707 0.67 0.543695
Target:  5'- cGgGGUCGUCCgCGCCCgAGccgccgauACCAcgGCg -3'
miRNA:   3'- -CgCCGGUAGGaGCGGGgUC--------UGGUa-CG- -5'
18338 3' -59.3 NC_004681.1 + 18106 0.67 0.513441
Target:  5'- cCGG-CAUCggCGCCCCcGGCCAgGCa -3'
miRNA:   3'- cGCCgGUAGgaGCGGGGuCUGGUaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.