Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18338 | 3' | -59.3 | NC_004681.1 | + | 12173 | 0.66 | 0.564186 |
Target: 5'- uCGGCCAcguaCUCGgCCUcGuCCAUGCg -3' miRNA: 3'- cGCCGGUag--GAGCgGGGuCuGGUACG- -5' |
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18338 | 3' | -59.3 | NC_004681.1 | + | 17494 | 0.66 | 0.596319 |
Target: 5'- gGCGGCCGUCCaugauguugacgagGUCCUcGACCGcGCu -3' miRNA: 3'- -CGCCGGUAGGag------------CGGGGuCUGGUaCG- -5' |
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18338 | 3' | -59.3 | NC_004681.1 | + | 60288 | 0.66 | 0.595277 |
Target: 5'- cGCGGCgGgugccgaucaCCUCGCgCUCAGcACCA-GCa -3' miRNA: 3'- -CGCCGgUa---------GGAGCG-GGGUC-UGGUaCG- -5' |
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18338 | 3' | -59.3 | NC_004681.1 | + | 6707 | 0.66 | 0.616157 |
Target: 5'- cGCGaaGCCcuugauGUCCUUGCCgCGGcCCAUGg -3' miRNA: 3'- -CGC--CGG------UAGGAGCGGgGUCuGGUACg -5' |
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18338 | 3' | -59.3 | NC_004681.1 | + | 25779 | 0.66 | 0.594235 |
Target: 5'- -aGGCCGacgCCUgGCCCCGccccuguGGCCAUa- -3' miRNA: 3'- cgCCGGUa--GGAgCGGGGU-------CUGGUAcg -5' |
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18338 | 3' | -59.3 | NC_004681.1 | + | 40714 | 0.66 | 0.583837 |
Target: 5'- gGCGGCCA-CCaucaacgUCGCCCUucaAGGCUuaGCu -3' miRNA: 3'- -CGCCGGUaGG-------AGCGGGG---UCUGGuaCG- -5' |
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18338 | 3' | -59.3 | NC_004681.1 | + | 30869 | 0.66 | 0.564186 |
Target: 5'- cGCGGCCGUuggugaccaggcCCUUggaGCCCgCGGACUcgaugagcAUGCc -3' miRNA: 3'- -CGCCGGUA------------GGAG---CGGG-GUCUGG--------UACG- -5' |
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18338 | 3' | -59.3 | NC_004681.1 | + | 14523 | 0.66 | 0.595277 |
Target: 5'- gGCGGCguagAUUUUCGCCUCGG-CCGccUGCu -3' miRNA: 3'- -CGCCGg---UAGGAGCGGGGUCuGGU--ACG- -5' |
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18338 | 3' | -59.3 | NC_004681.1 | + | 30249 | 0.66 | 0.616157 |
Target: 5'- cGCGGCCGcgccgCCUgagccCGaCCCaCAGGCCGccuUGUa -3' miRNA: 3'- -CGCCGGUa----GGA-----GC-GGG-GUCUGGU---ACG- -5' |
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18338 | 3' | -59.3 | NC_004681.1 | + | 30048 | 0.66 | 0.605707 |
Target: 5'- cGCGGCCAUCg--GCCUCGGAgCucccGCu -3' miRNA: 3'- -CGCCGGUAGgagCGGGGUCUgGua--CG- -5' |
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18338 | 3' | -59.3 | NC_004681.1 | + | 46605 | 0.66 | 0.595277 |
Target: 5'- cCGGCCca-CUCGCCgaGGACCccGCc -3' miRNA: 3'- cGCCGGuagGAGCGGggUCUGGuaCG- -5' |
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18338 | 3' | -59.3 | NC_004681.1 | + | 62365 | 0.66 | 0.609885 |
Target: 5'- gGCGGUgAUCUU-GCCCCcggcgcgguggacgaAGACCuugGCg -3' miRNA: 3'- -CGCCGgUAGGAgCGGGG---------------UCUGGua-CG- -5' |
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18338 | 3' | -59.3 | NC_004681.1 | + | 55106 | 0.66 | 0.564186 |
Target: 5'- cGUGGUUAUCaCUCGCCaCuCAGACUuaAUGa -3' miRNA: 3'- -CGCCGGUAG-GAGCGG-G-GUCUGG--UACg -5' |
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18338 | 3' | -59.3 | NC_004681.1 | + | 53818 | 0.66 | 0.564186 |
Target: 5'- --cGCCAUCCUgcucgccauUGCCUUcuucauggaGGGCCAUGCg -3' miRNA: 3'- cgcCGGUAGGA---------GCGGGG---------UCUGGUACG- -5' |
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18338 | 3' | -59.3 | NC_004681.1 | + | 37065 | 0.66 | 0.574509 |
Target: 5'- gGUGGCuCAUCCcagCgGCCUCAGaACCA-GCc -3' miRNA: 3'- -CGCCG-GUAGGa--G-CGGGGUC-UGGUaCG- -5' |
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18338 | 3' | -59.3 | NC_004681.1 | + | 69133 | 0.66 | 0.584875 |
Target: 5'- cUGGCCucCCUCGCCUaccGGCUcgGCu -3' miRNA: 3'- cGCCGGuaGGAGCGGGgu-CUGGuaCG- -5' |
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18338 | 3' | -59.3 | NC_004681.1 | + | 67995 | 0.66 | 0.601532 |
Target: 5'- -gGGCCAUCCgcaaggaagagaaCGCCuUCGGGCCucccgGCa -3' miRNA: 3'- cgCCGGUAGGa------------GCGG-GGUCUGGua---CG- -5' |
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18338 | 3' | -59.3 | NC_004681.1 | + | 7775 | 0.66 | 0.592153 |
Target: 5'- -aGGCCcgCCUCGaaggacugcucaacCCCCAGACUc--- -3' miRNA: 3'- cgCCGGuaGGAGC--------------GGGGUCUGGuacg -5' |
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18338 | 3' | -59.3 | NC_004681.1 | + | 5887 | 0.67 | 0.552888 |
Target: 5'- gGCGGCCAgcguucuUCCacaUCGCCgCGGugGCguUGCg -3' miRNA: 3'- -CGCCGGU-------AGG---AGCGGgGUC--UGguACG- -5' |
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18338 | 3' | -59.3 | NC_004681.1 | + | 17707 | 0.67 | 0.543695 |
Target: 5'- cGgGGUCGUCCgCGCCCgAGccgccgauACCAcgGCg -3' miRNA: 3'- -CgCCGGUAGGaGCGGGgUC--------UGGUa-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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