miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18342 5' -54.5 NC_004681.1 + 24547 0.67 0.792408
Target:  5'- cGuuGCCggACAGccGGUCAACGAUguugGGCGAg -3'
miRNA:   3'- -CggCGG--UGUC--UCAGUUGCUG----CUGCUa -5'
18342 5' -54.5 NC_004681.1 + 25239 0.67 0.792408
Target:  5'- gGCgGCCAUGGcGcCcGCGGCGGCGGUu -3'
miRNA:   3'- -CGgCGGUGUCuCaGuUGCUGCUGCUA- -5'
18342 5' -54.5 NC_004681.1 + 27138 0.67 0.772929
Target:  5'- cGCCGaCCACGGAcUCGAaGGCGACc-- -3'
miRNA:   3'- -CGGC-GGUGUCUcAGUUgCUGCUGcua -5'
18342 5' -54.5 NC_004681.1 + 27762 0.67 0.781769
Target:  5'- cGCCGCCGCcguaucgguaaccGGAGUUggauCGGCGACc-- -3'
miRNA:   3'- -CGGCGGUG-------------UCUCAGuu--GCUGCUGcua -5'
18342 5' -54.5 NC_004681.1 + 28127 0.71 0.582631
Target:  5'- gGCC-CCGCGG-G-CAACGGCGGCGGc -3'
miRNA:   3'- -CGGcGGUGUCuCaGUUGCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 30136 0.66 0.855
Target:  5'- gGCCgaugGCCGCGG---CGGCGAUGACGGUu -3'
miRNA:   3'- -CGG----CGGUGUCucaGUUGCUGCUGCUA- -5'
18342 5' -54.5 NC_004681.1 + 30245 0.69 0.679588
Target:  5'- cCCGCCACAG---CGGCGGCGGcCGGUa -3'
miRNA:   3'- cGGCGGUGUCucaGUUGCUGCU-GCUA- -5'
18342 5' -54.5 NC_004681.1 + 32015 0.66 0.820394
Target:  5'- cGgCGCCGCGGGuGUCGGC-ACGGcCGGUg -3'
miRNA:   3'- -CgGCGGUGUCU-CAGUUGcUGCU-GCUA- -5'
18342 5' -54.5 NC_004681.1 + 37045 0.67 0.762975
Target:  5'- gGCCGCCGCguGGAGUCGccuACugGAUGACu-- -3'
miRNA:   3'- -CGGCGGUG--UCUCAGU---UG--CUGCUGcua -5'
18342 5' -54.5 NC_004681.1 + 38318 0.66 0.846665
Target:  5'- cGCCGCCGCGGGacGUCuuCGGCcGCc-- -3'
miRNA:   3'- -CGGCGGUGUCU--CAGuuGCUGcUGcua -5'
18342 5' -54.5 NC_004681.1 + 40160 0.68 0.742687
Target:  5'- -aCGCCGCAGA-UCGA-GGCGAUGAg -3'
miRNA:   3'- cgGCGGUGUCUcAGUUgCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 41562 0.69 0.679588
Target:  5'- gGCCGCCauGCAGcgccaccccgcAGgCAGCGcACGGCGAUg -3'
miRNA:   3'- -CGGCGG--UGUC-----------UCaGUUGC-UGCUGCUA- -5'
18342 5' -54.5 NC_004681.1 + 42832 0.66 0.838114
Target:  5'- cGCCGCCACGGuaaacGUCAGUGugG-CGc- -3'
miRNA:   3'- -CGGCGGUGUCu----CAGUUGCugCuGCua -5'
18342 5' -54.5 NC_004681.1 + 43011 0.7 0.625704
Target:  5'- aGCCGCCAcCGGAGUgAGC-AgGAUGAUc -3'
miRNA:   3'- -CGGCGGU-GUCUCAgUUGcUgCUGCUA- -5'
18342 5' -54.5 NC_004681.1 + 43990 0.72 0.497819
Target:  5'- aGCCaGCCAUAGAGgCGACcgagcagGGCGGCGAg -3'
miRNA:   3'- -CGG-CGGUGUCUCaGUUG-------CUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 44410 0.67 0.782744
Target:  5'- cUCGCCACAGGGUguGgGACGcGCGc- -3'
miRNA:   3'- cGGCGGUGUCUCAguUgCUGC-UGCua -5'
18342 5' -54.5 NC_004681.1 + 44678 0.73 0.43966
Target:  5'- gGCgGCCGC-GAGcgCGGCGGCGAUGAg -3'
miRNA:   3'- -CGgCGGUGuCUCa-GUUGCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 44850 0.71 0.529731
Target:  5'- aGCCGcCCGCgagGGAGUCcuCGACGuCGAa -3'
miRNA:   3'- -CGGC-GGUG---UCUCAGuuGCUGCuGCUa -5'
18342 5' -54.5 NC_004681.1 + 47108 0.71 0.529731
Target:  5'- cGCCGCCGCuGAG-CGACGAgaaCGcCGAg -3'
miRNA:   3'- -CGGCGGUGuCUCaGUUGCU---GCuGCUa -5'
18342 5' -54.5 NC_004681.1 + 50162 0.66 0.820394
Target:  5'- cGUCGacCCGCAGgcAGUCGAUGGCGuCGGa -3'
miRNA:   3'- -CGGC--GGUGUC--UCAGUUGCUGCuGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.