miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18342 5' -54.5 NC_004681.1 + 716 0.69 0.678517
Target:  5'- gGCCGaaggCGCGGAGgaaguucUCGACGGCGuCGAUg -3'
miRNA:   3'- -CGGCg---GUGUCUC-------AGUUGCUGCuGCUA- -5'
18342 5' -54.5 NC_004681.1 + 2018 0.68 0.732377
Target:  5'- gGCCGCgGcCAGguGGUCGugGAgGGCGGc -3'
miRNA:   3'- -CGGCGgU-GUC--UCAGUugCUgCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 3876 0.67 0.792408
Target:  5'- --aGCCcaguGCAGAcuucgcGUCAGCGGCGAUGAc -3'
miRNA:   3'- cggCGG----UGUCU------CAGUUGCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 6994 0.66 0.855
Target:  5'- gGUgGCCACGGAcaugccgugGUCGACGuCGAgCGGg -3'
miRNA:   3'- -CGgCGGUGUCU---------CAGUUGCuGCU-GCUa -5'
18342 5' -54.5 NC_004681.1 + 9146 0.66 0.838114
Target:  5'- aCCGCCGCGGAGaUCGcggagaACGucuuCGACGc- -3'
miRNA:   3'- cGGCGGUGUCUC-AGU------UGCu---GCUGCua -5'
18342 5' -54.5 NC_004681.1 + 9309 0.68 0.742687
Target:  5'- -aCGCCuACGGcaacccGGUCAACGGCGGCa-- -3'
miRNA:   3'- cgGCGG-UGUC------UCAGUUGCUGCUGcua -5'
18342 5' -54.5 NC_004681.1 + 9989 0.66 0.811243
Target:  5'- uGCgGCCGCaAGuucgaucuGGUCGAgGACGACGu- -3'
miRNA:   3'- -CGgCGGUG-UC--------UCAGUUgCUGCUGCua -5'
18342 5' -54.5 NC_004681.1 + 10123 0.66 0.846665
Target:  5'- cCCGCagUACGG-GUCcACGAUGGCGAc -3'
miRNA:   3'- cGGCG--GUGUCuCAGuUGCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 10948 0.7 0.625704
Target:  5'- aCCGCgGgAGAGgucgCAaucGCGGCGGCGAUg -3'
miRNA:   3'- cGGCGgUgUCUCa---GU---UGCUGCUGCUA- -5'
18342 5' -54.5 NC_004681.1 + 13497 0.71 0.571942
Target:  5'- aGCCGCacaAGA-UCAACGGCGugGAg -3'
miRNA:   3'- -CGGCGgugUCUcAGUUGCUGCugCUa -5'
18342 5' -54.5 NC_004681.1 + 13905 0.66 0.846665
Target:  5'- gGCCGCCAC--GGUCAACGAguuGCGu- -3'
miRNA:   3'- -CGGCGGUGucUCAGUUGCUgc-UGCua -5'
18342 5' -54.5 NC_004681.1 + 15688 0.66 0.855
Target:  5'- aGCaCGCCuCGGAgGUCAugGACaccuaccgGGCGAa -3'
miRNA:   3'- -CG-GCGGuGUCU-CAGUugCUG--------CUGCUa -5'
18342 5' -54.5 NC_004681.1 + 16114 0.69 0.658094
Target:  5'- aGCCGCCACGGcuguGUCGgguaucggcuucGCGGCGcugGCGGc -3'
miRNA:   3'- -CGGCGGUGUCu---CAGU------------UGCUGC---UGCUa -5'
18342 5' -54.5 NC_004681.1 + 16349 0.68 0.732377
Target:  5'- uCCGCUGCGGcGGUgGGUGGCGACGAg -3'
miRNA:   3'- cGGCGGUGUC-UCAgUUGCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 17904 0.68 0.72197
Target:  5'- gGCCGCCGCGuuGAuGUCGGCcuGCGugGGc -3'
miRNA:   3'- -CGGCGGUGU--CU-CAGUUGc-UGCugCUa -5'
18342 5' -54.5 NC_004681.1 + 18729 0.72 0.498836
Target:  5'- aUCGCCA-AGGG-CGACGGCGGCGAg -3'
miRNA:   3'- cGGCGGUgUCUCaGUUGCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 19612 0.78 0.224701
Target:  5'- cGCUGCgGCGuGGUCGAUGACGGCGAg -3'
miRNA:   3'- -CGGCGgUGUcUCAGUUGCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 20559 0.67 0.782744
Target:  5'- uUCGCaGCGGAGUUAG-GGCGGCGAc -3'
miRNA:   3'- cGGCGgUGUCUCAGUUgCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 21430 0.73 0.43966
Target:  5'- cGCCGCUGCGGucgaccacGUCcACGACGAUGGUc -3'
miRNA:   3'- -CGGCGGUGUCu-------CAGuUGCUGCUGCUA- -5'
18342 5' -54.5 NC_004681.1 + 22361 0.67 0.762975
Target:  5'- cGCCGCCACgcGGAGUgAGC-ACGA-GAg -3'
miRNA:   3'- -CGGCGGUG--UCUCAgUUGcUGCUgCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.