miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18342 5' -54.5 NC_004681.1 + 67020 1.08 0.002119
Target:  5'- gGCCGCCACAGAGUCAACGACGACGAUg -3'
miRNA:   3'- -CGGCGGUGUCUCAGUUGCUGCUGCUA- -5'
18342 5' -54.5 NC_004681.1 + 61156 0.83 0.113078
Target:  5'- cGCCGCCGCGacgcccagggcaacuGGGUCGACGGCGACGc- -3'
miRNA:   3'- -CGGCGGUGU---------------CUCAGUUGCUGCUGCua -5'
18342 5' -54.5 NC_004681.1 + 19612 0.78 0.224701
Target:  5'- cGCUGCgGCGuGGUCGAUGACGGCGAg -3'
miRNA:   3'- -CGGCGgUGUcUCAGUUGCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 54423 0.74 0.411608
Target:  5'- --gGCCACAGGuggguggcGUCGAUGACGACGGa -3'
miRNA:   3'- cggCGGUGUCU--------CAGUUGCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 50972 0.73 0.430187
Target:  5'- gGCCGCCugcuuguCGGGGUacuCGGCGGCGAg -3'
miRNA:   3'- -CGGCGGu------GUCUCAguuGCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 50228 0.73 0.43966
Target:  5'- uGCCGCCGuc--GUCAGCGAgGGCGAUg -3'
miRNA:   3'- -CGGCGGUgucuCAGUUGCUgCUGCUA- -5'
18342 5' -54.5 NC_004681.1 + 44678 0.73 0.43966
Target:  5'- gGCgGCCGC-GAGcgCGGCGGCGAUGAg -3'
miRNA:   3'- -CGgCGGUGuCUCa-GUUGCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 21430 0.73 0.43966
Target:  5'- cGCCGCUGCGGucgaccacGUCcACGACGAUGGUc -3'
miRNA:   3'- -CGGCGGUGUCu-------CAGuUGCUGCUGCUA- -5'
18342 5' -54.5 NC_004681.1 + 69620 0.73 0.44925
Target:  5'- gGCCGCCGCAGcAGUgAgcacACGGCGugGc- -3'
miRNA:   3'- -CGGCGGUGUC-UCAgU----UGCUGCugCua -5'
18342 5' -54.5 NC_004681.1 + 65420 0.73 0.46877
Target:  5'- aGUCGCCG-GGAGUCGACGGagGACGGUc -3'
miRNA:   3'- -CGGCGGUgUCUCAGUUGCUg-CUGCUA- -5'
18342 5' -54.5 NC_004681.1 + 52796 0.72 0.478691
Target:  5'- cGUCGCCGgGGAGUgGAaggaaGACGAUGAa -3'
miRNA:   3'- -CGGCGGUgUCUCAgUUg----CUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 43990 0.72 0.497819
Target:  5'- aGCCaGCCAUAGAGgCGACcgagcagGGCGGCGAg -3'
miRNA:   3'- -CGG-CGGUGUCUCaGUUG-------CUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 18729 0.72 0.498836
Target:  5'- aUCGCCA-AGGG-CGACGGCGGCGAg -3'
miRNA:   3'- cGGCGGUgUCUCaGUUGCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 53058 0.72 0.519349
Target:  5'- uGCCGCCAgccugcCAGGccacGUCggUGACGAUGAa -3'
miRNA:   3'- -CGGCGGU------GUCU----CAGuuGCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 44850 0.71 0.529731
Target:  5'- aGCCGcCCGCgagGGAGUCcuCGACGuCGAa -3'
miRNA:   3'- -CGGC-GGUG---UCUCAGuuGCUGCuGCUa -5'
18342 5' -54.5 NC_004681.1 + 47108 0.71 0.529731
Target:  5'- cGCCGCCGCuGAG-CGACGAgaaCGcCGAg -3'
miRNA:   3'- -CGGCGGUGuCUCaGUUGCU---GCuGCUa -5'
18342 5' -54.5 NC_004681.1 + 67990 0.71 0.529731
Target:  5'- aGUCGCC--GGuGUCAaggGCGACGACGAa -3'
miRNA:   3'- -CGGCGGugUCuCAGU---UGCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 13497 0.71 0.571942
Target:  5'- aGCCGCacaAGA-UCAACGGCGugGAg -3'
miRNA:   3'- -CGGCGgugUCUcAGUUGCUGCugCUa -5'
18342 5' -54.5 NC_004681.1 + 28127 0.71 0.582631
Target:  5'- gGCC-CCGCGG-G-CAACGGCGGCGGc -3'
miRNA:   3'- -CGGcGGUGUCuCaGUUGCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 67927 0.7 0.625704
Target:  5'- cUCGCCGCGGAGaUGACGcACGACGc- -3'
miRNA:   3'- cGGCGGUGUCUCaGUUGC-UGCUGCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.