miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18342 5' -54.5 NC_004681.1 + 32015 0.66 0.820394
Target:  5'- cGgCGCCGCGGGuGUCGGC-ACGGcCGGUg -3'
miRNA:   3'- -CgGCGGUGUCU-CAGUUGcUGCU-GCUA- -5'
18342 5' -54.5 NC_004681.1 + 16349 0.68 0.732377
Target:  5'- uCCGCUGCGGcGGUgGGUGGCGACGAg -3'
miRNA:   3'- cGGCGGUGUC-UCAgUUGCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 9309 0.68 0.742687
Target:  5'- -aCGCCuACGGcaacccGGUCAACGGCGGCa-- -3'
miRNA:   3'- cgGCGG-UGUC------UCAGUUGCUGCUGcua -5'
18342 5' -54.5 NC_004681.1 + 40160 0.68 0.742687
Target:  5'- -aCGCCGCAGA-UCGA-GGCGAUGAg -3'
miRNA:   3'- cgGCGGUGUCUcAGUUgCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 61670 0.68 0.742687
Target:  5'- cGCCGCCGCGGAGgc--CGcCGcCGAg -3'
miRNA:   3'- -CGGCGGUGUCUCaguuGCuGCuGCUa -5'
18342 5' -54.5 NC_004681.1 + 44410 0.67 0.782744
Target:  5'- cUCGCCACAGGGUguGgGACGcGCGc- -3'
miRNA:   3'- cGGCGGUGUCUCAguUgCUGC-UGCua -5'
18342 5' -54.5 NC_004681.1 + 25239 0.67 0.792408
Target:  5'- gGCgGCCAUGGcGcCcGCGGCGGCGGUu -3'
miRNA:   3'- -CGgCGGUGUCuCaGuUGCUGCUGCUA- -5'
18342 5' -54.5 NC_004681.1 + 58242 0.67 0.802852
Target:  5'- aCCGCCAUGGAGUCuucgcuggccucacCGAaGACGAg -3'
miRNA:   3'- cGGCGGUGUCUCAGuu------------GCUgCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 9989 0.66 0.811243
Target:  5'- uGCgGCCGCaAGuucgaucuGGUCGAgGACGACGu- -3'
miRNA:   3'- -CGgCGGUG-UC--------UCAGUUgCUGCUGCua -5'
18342 5' -54.5 NC_004681.1 + 2018 0.68 0.732377
Target:  5'- gGCCGCgGcCAGguGGUCGugGAgGGCGGc -3'
miRNA:   3'- -CGGCGgU-GUC--UCAGUugCUgCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 68236 0.68 0.72197
Target:  5'- cGCCGCCACGGucUCAuCGACuACGc- -3'
miRNA:   3'- -CGGCGGUGUCucAGUuGCUGcUGCua -5'
18342 5' -54.5 NC_004681.1 + 41562 0.69 0.679588
Target:  5'- gGCCGCCauGCAGcgccaccccgcAGgCAGCGcACGGCGAUg -3'
miRNA:   3'- -CGGCGG--UGUC-----------UCaGUUGC-UGCUGCUA- -5'
18342 5' -54.5 NC_004681.1 + 19612 0.78 0.224701
Target:  5'- cGCUGCgGCGuGGUCGAUGACGGCGAg -3'
miRNA:   3'- -CGGCGgUGUcUCAGUUGCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 52796 0.72 0.478691
Target:  5'- cGUCGCCGgGGAGUgGAaggaaGACGAUGAa -3'
miRNA:   3'- -CGGCGGUgUCUCAgUUg----CUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 18729 0.72 0.498836
Target:  5'- aUCGCCA-AGGG-CGACGGCGGCGAg -3'
miRNA:   3'- cGGCGGUgUCUCaGUUGCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 47108 0.71 0.529731
Target:  5'- cGCCGCCGCuGAG-CGACGAgaaCGcCGAg -3'
miRNA:   3'- -CGGCGGUGuCUCaGUUGCU---GCuGCUa -5'
18342 5' -54.5 NC_004681.1 + 13497 0.71 0.571942
Target:  5'- aGCCGCacaAGA-UCAACGGCGugGAg -3'
miRNA:   3'- -CGGCGgugUCUcAGUUGCUGCugCUa -5'
18342 5' -54.5 NC_004681.1 + 28127 0.71 0.582631
Target:  5'- gGCC-CCGCGG-G-CAACGGCGGCGGc -3'
miRNA:   3'- -CGGcGGUGUCuCaGUUGCUGCUGCUa -5'
18342 5' -54.5 NC_004681.1 + 16114 0.69 0.658094
Target:  5'- aGCCGCCACGGcuguGUCGgguaucggcuucGCGGCGcugGCGGc -3'
miRNA:   3'- -CGGCGGUGUCu---CAGU------------UGCUGC---UGCUa -5'
18342 5' -54.5 NC_004681.1 + 30245 0.69 0.679588
Target:  5'- cCCGCCACAG---CGGCGGCGGcCGGUa -3'
miRNA:   3'- cGGCGGUGUCucaGUUGCUGCU-GCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.