miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18348 5' -55.8 NC_004681.1 + 48683 0.71 0.425033
Target:  5'- -cGGGCCAGCucccauGGGCcgAGUUcggcuucgagucGCCCGCg -3'
miRNA:   3'- cuUUCGGUCG------CCCGuaUCGA------------UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 42783 0.71 0.463588
Target:  5'- cGAAuGCCAGgGGGCGaAGUgcaaCCGCg -3'
miRNA:   3'- -CUUuCGGUCgCCCGUaUCGaug-GGCG- -5'
18348 5' -55.8 NC_004681.1 + 44135 0.69 0.545647
Target:  5'- cGAGGCC-GCGGGCcUGGCccucACCgGCc -3'
miRNA:   3'- cUUUCGGuCGCCCGuAUCGa---UGGgCG- -5'
18348 5' -55.8 NC_004681.1 + 14315 0.69 0.577674
Target:  5'- aGGucGCCGaggcGCGGGCcaaugAGCUGCgCGCc -3'
miRNA:   3'- -CUuuCGGU----CGCCCGua---UCGAUGgGCG- -5'
18348 5' -55.8 NC_004681.1 + 60014 0.69 0.577674
Target:  5'- -cAAGcCCGGUGGGCAc--CUGCUCGCc -3'
miRNA:   3'- cuUUC-GGUCGCCCGUaucGAUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 6462 0.7 0.473511
Target:  5'- ---cGCCAuCGGGCGUGGC-GCCCa- -3'
miRNA:   3'- cuuuCGGUcGCCCGUAUCGaUGGGcg -5'
18348 5' -55.8 NC_004681.1 + 7693 0.69 0.556266
Target:  5'- cGAAGUC-GCGGGCGUAGgUGCCa-- -3'
miRNA:   3'- cUUUCGGuCGCCCGUAUCgAUGGgcg -5'
18348 5' -55.8 NC_004681.1 + 47110 0.69 0.577674
Target:  5'- ---cGUCGGUGGGgAUGGUcaggGCCUGCa -3'
miRNA:   3'- cuuuCGGUCGCCCgUAUCGa---UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 22736 0.69 0.577674
Target:  5'- cGAucuGCUuGCGcGCGgcGCUGCCCGCg -3'
miRNA:   3'- -CUuu-CGGuCGCcCGUauCGAUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 30063 0.69 0.577674
Target:  5'- -uGGGCCgaccuGGCGGGCAagGGUuccaaucugUACCCGUa -3'
miRNA:   3'- cuUUCGG-----UCGCCCGUa-UCG---------AUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 41140 0.68 0.588448
Target:  5'- aGAGGGCCGucGCauGGGU--GGCUACCCuGCc -3'
miRNA:   3'- -CUUUCGGU--CG--CCCGuaUCGAUGGG-CG- -5'
18348 5' -55.8 NC_004681.1 + 8676 0.71 0.444076
Target:  5'- gGAAGGUCGGCaggaugccggGGGCGaAGgUACCCGUc -3'
miRNA:   3'- -CUUUCGGUCG----------CCCGUaUCgAUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 10344 0.71 0.434494
Target:  5'- --uAGCC-GUGGGUGUAGgUcACCCGCa -3'
miRNA:   3'- cuuUCGGuCGCCCGUAUCgA-UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 37482 0.72 0.406486
Target:  5'- aGAAGGCC-GCGGGCAU--CcAUCCGCa -3'
miRNA:   3'- -CUUUCGGuCGCCCGUAucGaUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 13697 0.72 0.37964
Target:  5'- -cGAGCUGGaCGucauuGGCGUGGCcGCCCGCg -3'
miRNA:   3'- cuUUCGGUC-GC-----CCGUAUCGaUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 17385 0.72 0.37964
Target:  5'- ---cGCCAGCaGGGCGUcGUcuccgggaUACCCGCc -3'
miRNA:   3'- cuuuCGGUCG-CCCGUAuCG--------AUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 70738 0.72 0.37964
Target:  5'- ---uGCCcguGCGGGCAUucuGCUAUCCGg -3'
miRNA:   3'- cuuuCGGu--CGCCCGUAu--CGAUGGGCg -5'
18348 5' -55.8 NC_004681.1 + 39786 0.74 0.299068
Target:  5'- aAGGGCCAuaucuuuuuguGCGGGCAauuGCUGCCuCGCc -3'
miRNA:   3'- cUUUCGGU-----------CGCCCGUau-CGAUGG-GCG- -5'
18348 5' -55.8 NC_004681.1 + 12990 0.8 0.122049
Target:  5'- cGAAGCCGGUguGGGUGUGGUcACCCGCa -3'
miRNA:   3'- cUUUCGGUCG--CCCGUAUCGaUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 3126 0.66 0.759303
Target:  5'- ---cGCC-GCGGGUGcgGGCaUugCCGCu -3'
miRNA:   3'- cuuuCGGuCGCCCGUa-UCG-AugGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.