miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18348 5' -55.8 NC_004681.1 + 16629 0.67 0.696661
Target:  5'- uGGAGgCGGCGGGCAU--CaGCCCGg -3'
miRNA:   3'- cUUUCgGUCGCCCGUAucGaUGGGCg -5'
18348 5' -55.8 NC_004681.1 + 19919 0.68 0.599257
Target:  5'- uGAAGGCCAccGCGGGCcu-GCUcaACaCGCa -3'
miRNA:   3'- -CUUUCGGU--CGCCCGuauCGA--UGgGCG- -5'
18348 5' -55.8 NC_004681.1 + 29784 0.68 0.610093
Target:  5'- --cAGCCAGCuuGCAUGGCUuCCCa- -3'
miRNA:   3'- cuuUCGGUCGccCGUAUCGAuGGGcg -5'
18348 5' -55.8 NC_004681.1 + 39518 0.68 0.631813
Target:  5'- --uGGCCcaAGCGGGC-UGGCaauCCCGg -3'
miRNA:   3'- cuuUCGG--UCGCCCGuAUCGau-GGGCg -5'
18348 5' -55.8 NC_004681.1 + 3023 0.67 0.66437
Target:  5'- ---cGCCAGC-GGCAa---UGCCCGCa -3'
miRNA:   3'- cuuuCGGUCGcCCGUaucgAUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 25237 0.67 0.66437
Target:  5'- -----aCGGCGGcCAUGGC-GCCCGCg -3'
miRNA:   3'- cuuucgGUCGCCcGUAUCGaUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 23596 0.67 0.675177
Target:  5'- cGAGGGCa--CGGGgGUGGCcAUCCGCc -3'
miRNA:   3'- -CUUUCGgucGCCCgUAUCGaUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 33750 0.67 0.685944
Target:  5'- gGAAgcGGCCgAGCGcGGCugggAGCU-UCCGCa -3'
miRNA:   3'- -CUU--UCGG-UCGC-CCGua--UCGAuGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 7575 0.67 0.696661
Target:  5'- gGAcGGCCGGgGaGGCcgugAUGGCaccuacGCCCGCg -3'
miRNA:   3'- -CUuUCGGUCgC-CCG----UAUCGa-----UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 33467 0.68 0.588448
Target:  5'- -cGGGCCAGUGGcCGUGGCUGauCCUGg -3'
miRNA:   3'- cuUUCGGUCGCCcGUAUCGAU--GGGCg -5'
18348 5' -55.8 NC_004681.1 + 60014 0.69 0.577674
Target:  5'- -cAAGcCCGGUGGGCAc--CUGCUCGCc -3'
miRNA:   3'- cuUUC-GGUCGCCCGUaucGAUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 14315 0.69 0.577674
Target:  5'- aGGucGCCGaggcGCGGGCcaaugAGCUGCgCGCc -3'
miRNA:   3'- -CUuuCGGU----CGCCCGua---UCGAUGgGCG- -5'
18348 5' -55.8 NC_004681.1 + 36824 0.73 0.345738
Target:  5'- ---cGCC-GCGGGcCGUGGCUGCUuCGCa -3'
miRNA:   3'- cuuuCGGuCGCCC-GUAUCGAUGG-GCG- -5'
18348 5' -55.8 NC_004681.1 + 39417 0.72 0.397405
Target:  5'- cAGAGCCGacgauGCGGGgGUgccaGGCUuccACCCGCa -3'
miRNA:   3'- cUUUCGGU-----CGCCCgUA----UCGA---UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 69992 0.72 0.406486
Target:  5'- cGAGAGUU-GCGGGU--AGCUauGCCCGCu -3'
miRNA:   3'- -CUUUCGGuCGCCCGuaUCGA--UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 48103 0.72 0.415697
Target:  5'- -cGAGCCccucaccccGGUGGGCAUcgagaAGCagaugGCCCGCg -3'
miRNA:   3'- cuUUCGG---------UCGCCCGUA-----UCGa----UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 38895 0.71 0.424094
Target:  5'- aGAAGGCCAGCcugcuGGCGUGGgUcaauccauggccaGCCUGCa -3'
miRNA:   3'- -CUUUCGGUCGc----CCGUAUCgA-------------UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 48683 0.71 0.425033
Target:  5'- -cGGGCCAGCucccauGGGCcgAGUUcggcuucgagucGCCCGCg -3'
miRNA:   3'- cuUUCGGUCG------CCCGuaUCGA------------UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 42783 0.71 0.463588
Target:  5'- cGAAuGCCAGgGGGCGaAGUgcaaCCGCg -3'
miRNA:   3'- -CUUuCGGUCgCCCGUaUCGaug-GGCG- -5'
18348 5' -55.8 NC_004681.1 + 44135 0.69 0.545647
Target:  5'- cGAGGCC-GCGGGCcUGGCccucACCgGCc -3'
miRNA:   3'- cUUUCGGuCGCCCGuAUCGa---UGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.