miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18348 5' -55.8 NC_004681.1 + 2029 0.67 0.661122
Target:  5'- cGAAGGCCgAGagGGGUcucugaugaagcugGUugAGUUGCCCGCa -3'
miRNA:   3'- -CUUUCGG-UCg-CCCG--------------UA--UCGAUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 3023 0.67 0.66437
Target:  5'- ---cGCCAGC-GGCAa---UGCCCGCa -3'
miRNA:   3'- cuuuCGGUCGcCCGUaucgAUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 3126 0.66 0.759303
Target:  5'- ---cGCC-GCGGGUGcgGGCaUugCCGCu -3'
miRNA:   3'- cuuuCGGuCGCCCGUa-UCG-AugGGCG- -5'
18348 5' -55.8 NC_004681.1 + 4034 0.67 0.685944
Target:  5'- -cAGGCCAGCGaagcccucGGUGUcGUUACCgGCa -3'
miRNA:   3'- cuUUCGGUCGC--------CCGUAuCGAUGGgCG- -5'
18348 5' -55.8 NC_004681.1 + 6462 0.7 0.473511
Target:  5'- ---cGCCAuCGGGCGUGGC-GCCCa- -3'
miRNA:   3'- cuuuCGGUcGCCCGUAUCGaUGGGcg -5'
18348 5' -55.8 NC_004681.1 + 7311 0.66 0.716847
Target:  5'- ---cGCCAGCGacguuccacccccGGCAcccggGGCUGacCCCGCc -3'
miRNA:   3'- cuuuCGGUCGC-------------CCGUa----UCGAU--GGGCG- -5'
18348 5' -55.8 NC_004681.1 + 7462 0.66 0.749115
Target:  5'- --cGGCC-GCGGGCuUGGCgggagGCuucgCCGCg -3'
miRNA:   3'- cuuUCGGuCGCCCGuAUCGa----UG----GGCG- -5'
18348 5' -55.8 NC_004681.1 + 7575 0.67 0.696661
Target:  5'- gGAcGGCCGGgGaGGCcgugAUGGCaccuacGCCCGCg -3'
miRNA:   3'- -CUuUCGGUCgC-CCG----UAUCGa-----UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 7693 0.69 0.556266
Target:  5'- cGAAGUC-GCGGGCGUAGgUGCCa-- -3'
miRNA:   3'- cUUUCGGuCGCCCGUAUCgAUGGgcg -5'
18348 5' -55.8 NC_004681.1 + 8676 0.71 0.444076
Target:  5'- gGAAGGUCGGCaggaugccggGGGCGaAGgUACCCGUc -3'
miRNA:   3'- -CUUUCGGUCG----------CCCGUaUCgAUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 10344 0.71 0.434494
Target:  5'- --uAGCC-GUGGGUGUAGgUcACCCGCa -3'
miRNA:   3'- cuuUCGGuCGCCCGUAUCgA-UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 12990 0.8 0.122049
Target:  5'- cGAAGCCGGUguGGGUGUGGUcACCCGCa -3'
miRNA:   3'- cUUUCGGUCG--CCCGUAUCGaUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 13697 0.72 0.37964
Target:  5'- -cGAGCUGGaCGucauuGGCGUGGCcGCCCGCg -3'
miRNA:   3'- cuUUCGGUC-GC-----CCGUAUCGaUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 14315 0.69 0.577674
Target:  5'- aGGucGCCGaggcGCGGGCcaaugAGCUGCgCGCc -3'
miRNA:   3'- -CUuuCGGU----CGCCCGua---UCGAUGgGCG- -5'
18348 5' -55.8 NC_004681.1 + 16082 0.68 0.610093
Target:  5'- cGGAGGCCAgcaucuggaccGCGGGgAUGGCacacCCCGa -3'
miRNA:   3'- -CUUUCGGU-----------CGCCCgUAUCGau--GGGCg -5'
18348 5' -55.8 NC_004681.1 + 16629 0.67 0.696661
Target:  5'- uGGAGgCGGCGGGCAU--CaGCCCGg -3'
miRNA:   3'- cUUUCgGUCGCCCGUAucGaUGGGCg -5'
18348 5' -55.8 NC_004681.1 + 17385 0.72 0.37964
Target:  5'- ---cGCCAGCaGGGCGUcGUcuccgggaUACCCGCc -3'
miRNA:   3'- cuuuCGGUCG-CCCGUAuCG--------AUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 17740 0.68 0.620948
Target:  5'- ---cGCCAGCGGGCcgGUAGUagUGCgaCGUg -3'
miRNA:   3'- cuuuCGGUCGCCCG--UAUCG--AUGg-GCG- -5'
18348 5' -55.8 NC_004681.1 + 19919 0.68 0.599257
Target:  5'- uGAAGGCCAccGCGGGCcu-GCUcaACaCGCa -3'
miRNA:   3'- -CUUUCGGU--CGCCCGuauCGA--UGgGCG- -5'
18348 5' -55.8 NC_004681.1 + 22736 0.69 0.577674
Target:  5'- cGAucuGCUuGCGcGCGgcGCUGCCCGCg -3'
miRNA:   3'- -CUuu-CGGuCGCcCGUauCGAUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.