miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18348 5' -55.8 NC_004681.1 + 70101 1.12 0.000639
Target:  5'- cGAAAGCCAGCGGGCAUAGCUACCCGCa -3'
miRNA:   3'- -CUUUCGGUCGCCCGUAUCGAUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 12990 0.8 0.122049
Target:  5'- cGAAGCCGGUguGGGUGUGGUcACCCGCa -3'
miRNA:   3'- cUUUCGGUCG--CCCGUAUCGaUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 61258 0.74 0.284634
Target:  5'- aAAGGCCAGCGcgucaucguGCAUGGCUACCUcaaGCa -3'
miRNA:   3'- cUUUCGGUCGCc--------CGUAUCGAUGGG---CG- -5'
18348 5' -55.8 NC_004681.1 + 39786 0.74 0.299068
Target:  5'- aAGGGCCAuaucuuuuuguGCGGGCAauuGCUGCCuCGCc -3'
miRNA:   3'- cUUUCGGU-----------CGCCCGUau-CGAUGG-GCG- -5'
18348 5' -55.8 NC_004681.1 + 36824 0.73 0.345738
Target:  5'- ---cGCC-GCGGGcCGUGGCUGCUuCGCa -3'
miRNA:   3'- cuuuCGGuCGCCC-GUAUCGAUGG-GCG- -5'
18348 5' -55.8 NC_004681.1 + 70738 0.72 0.37964
Target:  5'- ---uGCCcguGCGGGCAUucuGCUAUCCGg -3'
miRNA:   3'- cuuuCGGu--CGCCCGUAu--CGAUGGGCg -5'
18348 5' -55.8 NC_004681.1 + 17385 0.72 0.37964
Target:  5'- ---cGCCAGCaGGGCGUcGUcuccgggaUACCCGCc -3'
miRNA:   3'- cuuuCGGUCG-CCCGUAuCG--------AUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 13697 0.72 0.37964
Target:  5'- -cGAGCUGGaCGucauuGGCGUGGCcGCCCGCg -3'
miRNA:   3'- cuUUCGGUC-GC-----CCGUAUCGaUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 39417 0.72 0.397405
Target:  5'- cAGAGCCGacgauGCGGGgGUgccaGGCUuccACCCGCa -3'
miRNA:   3'- cUUUCGGU-----CGCCCgUA----UCGA---UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 69992 0.72 0.406486
Target:  5'- cGAGAGUU-GCGGGU--AGCUauGCCCGCu -3'
miRNA:   3'- -CUUUCGGuCGCCCGuaUCGA--UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 37482 0.72 0.406486
Target:  5'- aGAAGGCC-GCGGGCAU--CcAUCCGCa -3'
miRNA:   3'- -CUUUCGGuCGCCCGUAucGaUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 48103 0.72 0.415697
Target:  5'- -cGAGCCccucaccccGGUGGGCAUcgagaAGCagaugGCCCGCg -3'
miRNA:   3'- cuUUCGG---------UCGCCCGUA-----UCGa----UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 38895 0.71 0.424094
Target:  5'- aGAAGGCCAGCcugcuGGCGUGGgUcaauccauggccaGCCUGCa -3'
miRNA:   3'- -CUUUCGGUCGc----CCGUAUCgA-------------UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 48683 0.71 0.425033
Target:  5'- -cGGGCCAGCucccauGGGCcgAGUUcggcuucgagucGCCCGCg -3'
miRNA:   3'- cuUUCGGUCG------CCCGuaUCGA------------UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 10344 0.71 0.434494
Target:  5'- --uAGCC-GUGGGUGUAGgUcACCCGCa -3'
miRNA:   3'- cuuUCGGuCGCCCGUAUCgA-UGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 8676 0.71 0.444076
Target:  5'- gGAAGGUCGGCaggaugccggGGGCGaAGgUACCCGUc -3'
miRNA:   3'- -CUUUCGGUCG----------CCCGUaUCgAUGGGCG- -5'
18348 5' -55.8 NC_004681.1 + 42783 0.71 0.463588
Target:  5'- cGAAuGCCAGgGGGCGaAGUgcaaCCGCg -3'
miRNA:   3'- -CUUuCGGUCgCCCGUaUCGaug-GGCG- -5'
18348 5' -55.8 NC_004681.1 + 6462 0.7 0.473511
Target:  5'- ---cGCCAuCGGGCGUGGC-GCCCa- -3'
miRNA:   3'- cuuuCGGUcGCCCGUAUCGaUGGGcg -5'
18348 5' -55.8 NC_004681.1 + 44135 0.69 0.545647
Target:  5'- cGAGGCC-GCGGGCcUGGCccucACCgGCc -3'
miRNA:   3'- cUUUCGGuCGCCCGuAUCGa---UGGgCG- -5'
18348 5' -55.8 NC_004681.1 + 7693 0.69 0.556266
Target:  5'- cGAAGUC-GCGGGCGUAGgUGCCa-- -3'
miRNA:   3'- cUUUCGGuCGCCCGUAUCgAUGGgcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.