Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18376 | 5' | -51.9 | NC_004681.1 | + | 35731 | 0.66 | 0.919633 |
Target: 5'- -aGGUCCUCUCGUgu-CAgGGAuucgGGGCu -3' miRNA: 3'- agCCGGGGGAGUAaauGUgCUU----UCCG- -5' |
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18376 | 5' | -51.9 | NC_004681.1 | + | 38260 | 0.69 | 0.809625 |
Target: 5'- -aGGaCCCUC-CGggcuCACGAAAGGCg -3' miRNA: 3'- agCC-GGGGGaGUaaauGUGCUUUCCG- -5' |
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18376 | 5' | -51.9 | NC_004681.1 | + | 40631 | 0.66 | 0.928411 |
Target: 5'- gUGGCCgCCCUCucccagcuacuccgcCACGuAAGGCg -3' miRNA: 3'- aGCCGG-GGGAGuaaau----------GUGCuUUCCG- -5' |
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18376 | 5' | -51.9 | NC_004681.1 | + | 42241 | 0.66 | 0.943136 |
Target: 5'- aCGGCCgCCgagCugcuggucccgccCGCGGAAGGCg -3' miRNA: 3'- aGCCGGgGGa--Guaaau--------GUGCUUUCCG- -5' |
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18376 | 5' | -51.9 | NC_004681.1 | + | 43277 | 0.73 | 0.609293 |
Target: 5'- cUCGGCCCCCuUCAgg-GCGuCGAAGaugccagcGGCc -3' miRNA: 3'- -AGCCGGGGG-AGUaaaUGU-GCUUU--------CCG- -5' |
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18376 | 5' | -51.9 | NC_004681.1 | + | 45370 | 0.66 | 0.925554 |
Target: 5'- gUCGGUgCCCUgGUggacguucgUGgGCGAGAGcGCc -3' miRNA: 3'- -AGCCGgGGGAgUAa--------AUgUGCUUUC-CG- -5' |
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18376 | 5' | -51.9 | NC_004681.1 | + | 46605 | 0.66 | 0.941661 |
Target: 5'- -aGG-CCCCUCGgauuu-CGAGGGGCc -3' miRNA: 3'- agCCgGGGGAGUaaauguGCUUUCCG- -5' |
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18376 | 5' | -51.9 | NC_004681.1 | + | 49459 | 0.68 | 0.837072 |
Target: 5'- aCGGCCCCCgc---UACAaGGAcGGCa -3' miRNA: 3'- aGCCGGGGGaguaaAUGUgCUUuCCG- -5' |
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18376 | 5' | -51.9 | NC_004681.1 | + | 50892 | 0.69 | 0.828125 |
Target: 5'- gCGGCCUCCaauacuucgagUCGg--ACACGGGAGaGCc -3' miRNA: 3'- aGCCGGGGG-----------AGUaaaUGUGCUUUC-CG- -5' |
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18376 | 5' | -51.9 | NC_004681.1 | + | 55285 | 0.68 | 0.878405 |
Target: 5'- aCGGCCUCUUCGggUACG-GAcaccaggacAAGGCu -3' miRNA: 3'- aGCCGGGGGAGUaaAUGUgCU---------UUCCG- -5' |
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18376 | 5' | -51.9 | NC_004681.1 | + | 55985 | 0.69 | 0.800091 |
Target: 5'- cUCGGCUgccaggCCCUCAcgcaGCGCGAcgccaaggAGGGCg -3' miRNA: 3'- -AGCCGG------GGGAGUaaa-UGUGCU--------UUCCG- -5' |
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18376 | 5' | -51.9 | NC_004681.1 | + | 62553 | 0.66 | 0.938124 |
Target: 5'- -gGGCgCCCUCGgacucgauggccuggACGCGGAAuucGGCg -3' miRNA: 3'- agCCGgGGGAGUaaa------------UGUGCUUU---CCG- -5' |
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18376 | 5' | -51.9 | NC_004681.1 | + | 63741 | 0.66 | 0.936567 |
Target: 5'- aCGGCgCCCUCgg-UACGCcaccaccgacuGAAcgGGGCu -3' miRNA: 3'- aGCCGgGGGAGuaaAUGUG-----------CUU--UCCG- -5' |
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18376 | 5' | -51.9 | NC_004681.1 | + | 64918 | 0.67 | 0.89178 |
Target: 5'- gCGGCgCCCgccuggaGCACGAGGuGGCg -3' miRNA: 3'- aGCCGgGGGaguaaa-UGUGCUUU-CCG- -5' |
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18376 | 5' | -51.9 | NC_004681.1 | + | 66188 | 0.83 | 0.164588 |
Target: 5'- cCGGCCCCCUCAcgaacgucagcuaccUACugGAAAGGUg -3' miRNA: 3'- aGCCGGGGGAGUaa-------------AUGugCUUUCCG- -5' |
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18376 | 5' | -51.9 | NC_004681.1 | + | 67811 | 0.68 | 0.869031 |
Target: 5'- uUCGGCCCCUaugacagcgUCGUgcgucaucucCGCGGcGAGGCu -3' miRNA: 3'- -AGCCGGGGG---------AGUAaau-------GUGCU-UUCCG- -5' |
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18376 | 5' | -51.9 | NC_004681.1 | + | 67938 | 0.67 | 0.912802 |
Target: 5'- gCGGCUUCCUCGgagGCGgcggcggucucauCGAcGGGCg -3' miRNA: 3'- aGCCGGGGGAGUaaaUGU-------------GCUuUCCG- -5' |
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18376 | 5' | -51.9 | NC_004681.1 | + | 68637 | 0.69 | 0.82174 |
Target: 5'- cCGGCCgCCUUCucgaguaccuucucgUGCGCGAGuuccuGGGCg -3' miRNA: 3'- aGCCGG-GGGAGuaa------------AUGUGCUU-----UCCG- -5' |
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18376 | 5' | -51.9 | NC_004681.1 | + | 75750 | 0.66 | 0.931198 |
Target: 5'- aUCGGaguuCCCCUCGgugcauagAUAUGcAGGGCa -3' miRNA: 3'- -AGCCg---GGGGAGUaaa-----UGUGCuUUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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