miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18376 5' -51.9 NC_004681.1 + 529 0.66 0.941661
Target:  5'- gCGGCCgcgaguCCCUCA-----ACGAcGGGCa -3'
miRNA:   3'- aGCCGG------GGGAGUaaaugUGCUuUCCG- -5'
18376 5' -51.9 NC_004681.1 + 1265 0.73 0.587384
Target:  5'- gUGGCCCCCgaCAUgu---CGGAGGGCg -3'
miRNA:   3'- aGCCGGGGGa-GUAaauguGCUUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 7004 0.73 0.609293
Target:  5'- uUCGGa-CCCUCGU--GgACGAGGGGCa -3'
miRNA:   3'- -AGCCggGGGAGUAaaUgUGCUUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 9675 1.14 0.001658
Target:  5'- cUCGGCCCCCUCAUUUACACGAAAGGCg -3'
miRNA:   3'- -AGCCGGGGGAGUAAAUGUGCUUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 10164 0.68 0.845803
Target:  5'- cCGGCCUCaUCuucgACACGAccGGCc -3'
miRNA:   3'- aGCCGGGGgAGuaaaUGUGCUuuCCG- -5'
18376 5' -51.9 NC_004681.1 + 12292 0.66 0.931198
Target:  5'- gUGGCaaCCCUCG---GCACGGauGAGGUg -3'
miRNA:   3'- aGCCGg-GGGAGUaaaUGUGCU--UUCCG- -5'
18376 5' -51.9 NC_004681.1 + 13004 0.68 0.85431
Target:  5'- cUCGGUgcgCCCCUUGUggUGCGCGAcaucgucagucAGGCg -3'
miRNA:   3'- -AGCCG---GGGGAGUAa-AUGUGCUu----------UCCG- -5'
18376 5' -51.9 NC_004681.1 + 17246 0.68 0.878405
Target:  5'- aCGGCUaccucccguaCCUCAacUACGCGGgcGGCg -3'
miRNA:   3'- aGCCGGg---------GGAGUaaAUGUGCUuuCCG- -5'
18376 5' -51.9 NC_004681.1 + 17931 0.67 0.900224
Target:  5'- gCGGUCCCCgCAggugagUGC-CG-AGGGCg -3'
miRNA:   3'- aGCCGGGGGaGUaa----AUGuGCuUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 18491 0.66 0.936567
Target:  5'- -gGGCUCCC-CGcggUACGCGAGcuugcGGCg -3'
miRNA:   3'- agCCGGGGGaGUaa-AUGUGCUUu----CCG- -5'
18376 5' -51.9 NC_004681.1 + 18918 0.66 0.925554
Target:  5'- cCGGUCCCCaggCucccguCGCGGGAGcGCa -3'
miRNA:   3'- aGCCGGGGGa--Guaaau-GUGCUUUC-CG- -5'
18376 5' -51.9 NC_004681.1 + 24870 0.68 0.85431
Target:  5'- -aGGCUCCCUCAccaGCAauggcGAGGGCg -3'
miRNA:   3'- agCCGGGGGAGUaaaUGUgc---UUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 25873 0.66 0.931198
Target:  5'- gCGGCCCuUCUCGggUcCGCGcuuGGCg -3'
miRNA:   3'- aGCCGGG-GGAGUaaAuGUGCuuuCCG- -5'
18376 5' -51.9 NC_004681.1 + 26942 0.72 0.64228
Target:  5'- aCGGUCCCgCguagaCGUgagacagGCGCGAGAGGCc -3'
miRNA:   3'- aGCCGGGG-Ga----GUAaa-----UGUGCUUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 28572 0.66 0.919633
Target:  5'- cCGGCCUUCaUCGUUgcgauguagGCGCGGAuGGUc -3'
miRNA:   3'- aGCCGGGGG-AGUAAa--------UGUGCUUuCCG- -5'
18376 5' -51.9 NC_004681.1 + 29980 0.66 0.925554
Target:  5'- gUCGGCCcaaCCCcCA---ACACaGGAGGCa -3'
miRNA:   3'- -AGCCGG---GGGaGUaaaUGUGcUUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 30225 0.7 0.760307
Target:  5'- cUCGGUaCCCUUGgccgACGCGGagGAGGCa -3'
miRNA:   3'- -AGCCGgGGGAGUaaa-UGUGCU--UUCCG- -5'
18376 5' -51.9 NC_004681.1 + 32969 0.68 0.837072
Target:  5'- uUCGGCaaCC-CGUaccGCGCGAAGGGUg -3'
miRNA:   3'- -AGCCGggGGaGUAaa-UGUGCUUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 34006 0.69 0.790381
Target:  5'- aUCGGCCCgCUgCAgggaaaUGCccCGGGAGGCg -3'
miRNA:   3'- -AGCCGGGgGA-GUaa----AUGu-GCUUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 35390 0.7 0.739584
Target:  5'- aUCGGCCgCCUCAaggGCGCc-GAGGUc -3'
miRNA:   3'- -AGCCGGgGGAGUaaaUGUGcuUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.