miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18376 5' -51.9 NC_004681.1 + 63741 0.66 0.936567
Target:  5'- aCGGCgCCCUCgg-UACGCcaccaccgacuGAAcgGGGCu -3'
miRNA:   3'- aGCCGgGGGAGuaaAUGUG-----------CUU--UCCG- -5'
18376 5' -51.9 NC_004681.1 + 55285 0.68 0.878405
Target:  5'- aCGGCCUCUUCGggUACG-GAcaccaggacAAGGCu -3'
miRNA:   3'- aGCCGGGGGAGUaaAUGUgCU---------UUCCG- -5'
18376 5' -51.9 NC_004681.1 + 64918 0.67 0.89178
Target:  5'- gCGGCgCCCgccuggaGCACGAGGuGGCg -3'
miRNA:   3'- aGCCGgGGGaguaaa-UGUGCUUU-CCG- -5'
18376 5' -51.9 NC_004681.1 + 17931 0.67 0.900224
Target:  5'- gCGGUCCCCgCAggugagUGC-CG-AGGGCg -3'
miRNA:   3'- aGCCGGGGGaGUaa----AUGuGCuUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 35731 0.66 0.919633
Target:  5'- -aGGUCCUCUCGUgu-CAgGGAuucgGGGCu -3'
miRNA:   3'- agCCGGGGGAGUAaauGUgCUU----UCCG- -5'
18376 5' -51.9 NC_004681.1 + 29980 0.66 0.925554
Target:  5'- gUCGGCCcaaCCCcCA---ACACaGGAGGCa -3'
miRNA:   3'- -AGCCGG---GGGaGUaaaUGUGcUUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 18918 0.66 0.925554
Target:  5'- cCGGUCCCCaggCucccguCGCGGGAGcGCa -3'
miRNA:   3'- aGCCGGGGGa--Guaaau-GUGCUUUC-CG- -5'
18376 5' -51.9 NC_004681.1 + 40631 0.66 0.928411
Target:  5'- gUGGCCgCCCUCucccagcuacuccgcCACGuAAGGCg -3'
miRNA:   3'- aGCCGG-GGGAGuaaau----------GUGCuUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 12292 0.66 0.931198
Target:  5'- gUGGCaaCCCUCG---GCACGGauGAGGUg -3'
miRNA:   3'- aGCCGg-GGGAGUaaaUGUGCU--UUCCG- -5'
18376 5' -51.9 NC_004681.1 + 17246 0.68 0.878405
Target:  5'- aCGGCUaccucccguaCCUCAacUACGCGGgcGGCg -3'
miRNA:   3'- aGCCGGg---------GGAGUaaAUGUGCUuuCCG- -5'
18376 5' -51.9 NC_004681.1 + 67811 0.68 0.869031
Target:  5'- uUCGGCCCCUaugacagcgUCGUgcgucaucucCGCGGcGAGGCu -3'
miRNA:   3'- -AGCCGGGGG---------AGUAaau-------GUGCU-UUCCG- -5'
18376 5' -51.9 NC_004681.1 + 24870 0.68 0.85431
Target:  5'- -aGGCUCCCUCAccaGCAauggcGAGGGCg -3'
miRNA:   3'- agCCGGGGGAGUaaaUGUgc---UUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 1265 0.73 0.587384
Target:  5'- gUGGCCCCCgaCAUgu---CGGAGGGCg -3'
miRNA:   3'- aGCCGGGGGa-GUAaauguGCUUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 7004 0.73 0.609293
Target:  5'- uUCGGa-CCCUCGU--GgACGAGGGGCa -3'
miRNA:   3'- -AGCCggGGGAGUAaaUgUGCUUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 55985 0.69 0.800091
Target:  5'- cUCGGCUgccaggCCCUCAcgcaGCGCGAcgccaaggAGGGCg -3'
miRNA:   3'- -AGCCGG------GGGAGUaaa-UGUGCU--------UUCCG- -5'
18376 5' -51.9 NC_004681.1 + 38260 0.69 0.809625
Target:  5'- -aGGaCCCUC-CGggcuCACGAAAGGCg -3'
miRNA:   3'- agCC-GGGGGaGUaaauGUGCUUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 50892 0.69 0.828125
Target:  5'- gCGGCCUCCaauacuucgagUCGg--ACACGGGAGaGCc -3'
miRNA:   3'- aGCCGGGGG-----------AGUaaaUGUGCUUUC-CG- -5'
18376 5' -51.9 NC_004681.1 + 49459 0.68 0.837072
Target:  5'- aCGGCCCCCgc---UACAaGGAcGGCa -3'
miRNA:   3'- aGCCGGGGGaguaaAUGUgCUUuCCG- -5'
18376 5' -51.9 NC_004681.1 + 32969 0.68 0.837072
Target:  5'- uUCGGCaaCC-CGUaccGCGCGAAGGGUg -3'
miRNA:   3'- -AGCCGggGGaGUAaa-UGUGCUUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 10164 0.68 0.845803
Target:  5'- cCGGCCUCaUCuucgACACGAccGGCc -3'
miRNA:   3'- aGCCGGGGgAGuaaaUGUGCUuuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.