miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18376 5' -51.9 NC_004681.1 + 9675 1.14 0.001658
Target:  5'- cUCGGCCCCCUCAUUUACACGAAAGGCg -3'
miRNA:   3'- -AGCCGGGGGAGUAAAUGUGCUUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 66188 0.83 0.164588
Target:  5'- cCGGCCCCCUCAcgaacgucagcuaccUACugGAAAGGUg -3'
miRNA:   3'- aGCCGGGGGAGUaa-------------AUGugCUUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 1265 0.73 0.587384
Target:  5'- gUGGCCCCCgaCAUgu---CGGAGGGCg -3'
miRNA:   3'- aGCCGGGGGa-GUAaauguGCUUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 43277 0.73 0.609293
Target:  5'- cUCGGCCCCCuUCAgg-GCGuCGAAGaugccagcGGCc -3'
miRNA:   3'- -AGCCGGGGG-AGUaaaUGU-GCUUU--------CCG- -5'
18376 5' -51.9 NC_004681.1 + 7004 0.73 0.609293
Target:  5'- uUCGGa-CCCUCGU--GgACGAGGGGCa -3'
miRNA:   3'- -AGCCggGGGAGUAaaUgUGCUUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 26942 0.72 0.64228
Target:  5'- aCGGUCCCgCguagaCGUgagacagGCGCGAGAGGCc -3'
miRNA:   3'- aGCCGGGG-Ga----GUAaa-----UGUGCUUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 35390 0.7 0.739584
Target:  5'- aUCGGCCgCCUCAaggGCGCc-GAGGUc -3'
miRNA:   3'- -AGCCGGgGGAGUaaaUGUGcuUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 30225 0.7 0.760307
Target:  5'- cUCGGUaCCCUUGgccgACGCGGagGAGGCa -3'
miRNA:   3'- -AGCCGgGGGAGUaaa-UGUGCU--UUCCG- -5'
18376 5' -51.9 NC_004681.1 + 34006 0.69 0.790381
Target:  5'- aUCGGCCCgCUgCAgggaaaUGCccCGGGAGGCg -3'
miRNA:   3'- -AGCCGGGgGA-GUaa----AUGu-GCUUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 55985 0.69 0.800091
Target:  5'- cUCGGCUgccaggCCCUCAcgcaGCGCGAcgccaaggAGGGCg -3'
miRNA:   3'- -AGCCGG------GGGAGUaaa-UGUGCU--------UUCCG- -5'
18376 5' -51.9 NC_004681.1 + 38260 0.69 0.809625
Target:  5'- -aGGaCCCUC-CGggcuCACGAAAGGCg -3'
miRNA:   3'- agCC-GGGGGaGUaaauGUGCUUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 68637 0.69 0.82174
Target:  5'- cCGGCCgCCUUCucgaguaccuucucgUGCGCGAGuuccuGGGCg -3'
miRNA:   3'- aGCCGG-GGGAGuaa------------AUGUGCUU-----UCCG- -5'
18376 5' -51.9 NC_004681.1 + 50892 0.69 0.828125
Target:  5'- gCGGCCUCCaauacuucgagUCGg--ACACGGGAGaGCc -3'
miRNA:   3'- aGCCGGGGG-----------AGUaaaUGUGCUUUC-CG- -5'
18376 5' -51.9 NC_004681.1 + 32969 0.68 0.837072
Target:  5'- uUCGGCaaCC-CGUaccGCGCGAAGGGUg -3'
miRNA:   3'- -AGCCGggGGaGUAaa-UGUGCUUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 49459 0.68 0.837072
Target:  5'- aCGGCCCCCgc---UACAaGGAcGGCa -3'
miRNA:   3'- aGCCGGGGGaguaaAUGUgCUUuCCG- -5'
18376 5' -51.9 NC_004681.1 + 10164 0.68 0.845803
Target:  5'- cCGGCCUCaUCuucgACACGAccGGCc -3'
miRNA:   3'- aGCCGGGGgAGuaaaUGUGCUuuCCG- -5'
18376 5' -51.9 NC_004681.1 + 24870 0.68 0.85431
Target:  5'- -aGGCUCCCUCAccaGCAauggcGAGGGCg -3'
miRNA:   3'- agCCGGGGGAGUaaaUGUgc---UUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 13004 0.68 0.85431
Target:  5'- cUCGGUgcgCCCCUUGUggUGCGCGAcaucgucagucAGGCg -3'
miRNA:   3'- -AGCCG---GGGGAGUAa-AUGUGCUu----------UCCG- -5'
18376 5' -51.9 NC_004681.1 + 67811 0.68 0.869031
Target:  5'- uUCGGCCCCUaugacagcgUCGUgcgucaucucCGCGGcGAGGCu -3'
miRNA:   3'- -AGCCGGGGG---------AGUAaau-------GUGCU-UUCCG- -5'
18376 5' -51.9 NC_004681.1 + 55285 0.68 0.878405
Target:  5'- aCGGCCUCUUCGggUACG-GAcaccaggacAAGGCu -3'
miRNA:   3'- aGCCGGGGGAGUaaAUGUgCU---------UUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.