miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18387 3' -62.6 NC_004681.1 + 28253 0.67 0.331826
Target:  5'- ----uGCCgGUgCCGCUG-CCGCCGCu -3'
miRNA:   3'- aauugUGGgCGgGGCGACgGGCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 28928 0.66 0.397121
Target:  5'- ----aGCCCGUgCCUGC-GCCUGCCAg -3'
miRNA:   3'- aauugUGGGCG-GGGCGaCGGGCGGUg -5'
18387 3' -62.6 NC_004681.1 + 30866 0.7 0.204274
Target:  5'- ---cCGCCCGCcgaCCCGCUGgagcCCCGCgACa -3'
miRNA:   3'- aauuGUGGGCG---GGGCGAC----GGGCGgUG- -5'
18387 3' -62.6 NC_004681.1 + 33045 0.67 0.347385
Target:  5'- -aAGCACCCGCCgCCGaugaaGUCCuucagcgauGCCGCa -3'
miRNA:   3'- aaUUGUGGGCGG-GGCga---CGGG---------CGGUG- -5'
18387 3' -62.6 NC_004681.1 + 33340 0.72 0.153568
Target:  5'- -gGGCACCCGCCCgcacaucaCGCUGgcugagaCCgGCCGCg -3'
miRNA:   3'- aaUUGUGGGCGGG--------GCGAC-------GGgCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 36768 0.66 0.388519
Target:  5'- -cAGCGCguCUGCCaggCCGCUgGCCCGCCc- -3'
miRNA:   3'- aaUUGUG--GGCGG---GGCGA-CGGGCGGug -5'
18387 3' -62.6 NC_004681.1 + 39593 0.73 0.121459
Target:  5'- aUGAguCCCGCCUCGCUGCCaccgGCCu- -3'
miRNA:   3'- aAUUguGGGCGGGGCGACGGg---CGGug -5'
18387 3' -62.6 NC_004681.1 + 39782 0.66 0.397121
Target:  5'- ---uCGCCCGCCgCGCgaccaucGCCUcCCACg -3'
miRNA:   3'- aauuGUGGGCGGgGCGa------CGGGcGGUG- -5'
18387 3' -62.6 NC_004681.1 + 39835 0.69 0.255495
Target:  5'- --cGCACCgCGCgCaCCGC-GCCCGCgCGCg -3'
miRNA:   3'- aauUGUGG-GCG-G-GGCGaCGGGCG-GUG- -5'
18387 3' -62.6 NC_004681.1 + 40487 0.67 0.339541
Target:  5'- -aGACACCgGCCaCGCUGgCggUGCCGCu -3'
miRNA:   3'- aaUUGUGGgCGGgGCGACgG--GCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 41947 0.68 0.302264
Target:  5'- -gGACAggUCgGCUCCGCggagaucgGCCCGCUGCa -3'
miRNA:   3'- aaUUGU--GGgCGGGGCGa-------CGGGCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 43698 0.69 0.255495
Target:  5'- --cACAcCCCGCCgCCGCaGUacaCCGCCGCc -3'
miRNA:   3'- aauUGU-GGGCGG-GGCGaCG---GGCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 44045 0.72 0.162195
Target:  5'- -cAACACCUcCCaCUGCgggGCCUGCCACa -3'
miRNA:   3'- aaUUGUGGGcGG-GGCGa--CGGGCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 44117 0.66 0.371687
Target:  5'- -aGGCACCUGCCucacccccgaggCCGCgggccugGCCCucaccgGCCGCg -3'
miRNA:   3'- aaUUGUGGGCGG------------GGCGa------CGGG------CGGUG- -5'
18387 3' -62.6 NC_004681.1 + 45068 0.67 0.324241
Target:  5'- -aAGCAUCCGCCgCGgucgagGCCCucGCCGCg -3'
miRNA:   3'- aaUUGUGGGCGGgGCga----CGGG--CGGUG- -5'
18387 3' -62.6 NC_004681.1 + 46410 0.67 0.338763
Target:  5'- ----uGCCUGgCCCacgaugcaggaugGCUGCCCGCCGu -3'
miRNA:   3'- aauugUGGGCgGGG-------------CGACGGGCGGUg -5'
18387 3' -62.6 NC_004681.1 + 46621 0.67 0.347385
Target:  5'- -gGAC-CCCGCCCCGCacacGCCCaCUg- -3'
miRNA:   3'- aaUUGuGGGCGGGGCGa---CGGGcGGug -5'
18387 3' -62.6 NC_004681.1 + 46830 0.66 0.397121
Target:  5'- -aGACGCa-GCCCCGCgGCaaCCGCCcCg -3'
miRNA:   3'- aaUUGUGggCGGGGCGaCG--GGCGGuG- -5'
18387 3' -62.6 NC_004681.1 + 48561 0.76 0.0768
Target:  5'- -cAGCACCCaGCCCUGCUGCaucguggGCCACg -3'
miRNA:   3'- aaUUGUGGG-CGGGGCGACGgg-----CGGUG- -5'
18387 3' -62.6 NC_004681.1 + 49254 0.66 0.397121
Target:  5'- ---gUACUCGCUgucgCCGCUGCCauCGUCACg -3'
miRNA:   3'- aauuGUGGGCGG----GGCGACGG--GCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.