Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18387 | 3' | -62.6 | NC_004681.1 | + | 3032 | 0.66 | 0.388519 |
Target: 5'- -cAAUGCCCGCaCCCGCggcGCCaaggGCCu- -3' miRNA: 3'- aaUUGUGGGCG-GGGCGa--CGGg---CGGug -5' |
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18387 | 3' | -62.6 | NC_004681.1 | + | 3283 | 0.67 | 0.316047 |
Target: 5'- ---cCACCCucaaggaGUCCCGC-GCCCGCCu- -3' miRNA: 3'- aauuGUGGG-------CGGGGCGaCGGGCGGug -5' |
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18387 | 3' | -62.6 | NC_004681.1 | + | 5193 | 0.69 | 0.261795 |
Target: 5'- --cGCGCCCGCCauggccgaGCUG-UCGCCACa -3' miRNA: 3'- aauUGUGGGCGGgg------CGACgGGCGGUG- -5' |
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18387 | 3' | -62.6 | NC_004681.1 | + | 7343 | 0.7 | 0.220278 |
Target: 5'- cUGAC-CCCGCCgCCGCggcgaagccuCCCGCCAa -3' miRNA: 3'- aAUUGuGGGCGG-GGCGac--------GGGCGGUg -5' |
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18387 | 3' | -62.6 | NC_004681.1 | + | 7865 | 0.69 | 0.268221 |
Target: 5'- cUGACgaagaGCCCGCgCCCGUcgaUGagaCCGCCGCc -3' miRNA: 3'- aAUUG-----UGGGCG-GGGCG---ACg--GGCGGUG- -5' |
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18387 | 3' | -62.6 | NC_004681.1 | + | 9894 | 0.68 | 0.302264 |
Target: 5'- gUGACAUUCGCCCagcaGCUGgCCGaCGCc -3' miRNA: 3'- aAUUGUGGGCGGGg---CGACgGGCgGUG- -5' |
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18387 | 3' | -62.6 | NC_004681.1 | + | 10646 | 0.68 | 0.281453 |
Target: 5'- cUGACcgcuGCCUGgcgcCCCCGgUGCCCGCgGCc -3' miRNA: 3'- aAUUG----UGGGC----GGGGCgACGGGCGgUG- -5' |
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18387 | 3' | -62.6 | NC_004681.1 | + | 13113 | 1.05 | 0.000442 |
Target: 5'- gUUAACACCCGCCCCGCUGCCCGCCACc -3' miRNA: 3'- -AAUUGUGGGCGGGGCGACGGGCGGUG- -5' |
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18387 | 3' | -62.6 | NC_004681.1 | + | 16032 | 0.67 | 0.316785 |
Target: 5'- cUGGCAagggCGCCgCCGCUGUcaccgcauCCGCCGCa -3' miRNA: 3'- aAUUGUgg--GCGG-GGCGACG--------GGCGGUG- -5' |
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18387 | 3' | -62.6 | NC_004681.1 | + | 18487 | 0.66 | 0.397121 |
Target: 5'- uUUGcCGCCgCgGCCgCCGCcugGCCUGCCAUg -3' miRNA: 3'- -AAUuGUGG-G-CGG-GGCGa--CGGGCGGUG- -5' |
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18387 | 3' | -62.6 | NC_004681.1 | + | 23355 | 0.68 | 0.288261 |
Target: 5'- -aGGCGCCCGagguggucaaCCUC-CUGCCCGCCu- -3' miRNA: 3'- aaUUGUGGGC----------GGGGcGACGGGCGGug -5' |
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18387 | 3' | -62.6 | NC_004681.1 | + | 23683 | 0.66 | 0.40409 |
Target: 5'- --cGCGCCCGCCuCCGCggacauagagugGCCCGg--- -3' miRNA: 3'- aauUGUGGGCGG-GGCGa-----------CGGGCggug -5' |
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18387 | 3' | -62.6 | NC_004681.1 | + | 24663 | 0.69 | 0.255495 |
Target: 5'- -cGACaACCCGCCCgaGCUGaUCGCCAa -3' miRNA: 3'- aaUUG-UGGGCGGGg-CGACgGGCGGUg -5' |
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18387 | 3' | -62.6 | NC_004681.1 | + | 25083 | 0.66 | 0.388519 |
Target: 5'- -cGACGCCUGUgCCGCcagagccCCCGUCGCc -3' miRNA: 3'- aaUUGUGGGCGgGGCGac-----GGGCGGUG- -5' |
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18387 | 3' | -62.6 | NC_004681.1 | + | 25303 | 0.71 | 0.189287 |
Target: 5'- -aAGCGgUCGCCgCCGUUGCCagCGCCGCc -3' miRNA: 3'- aaUUGUgGGCGG-GGCGACGG--GCGGUG- -5' |
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18387 | 3' | -62.6 | NC_004681.1 | + | 25775 | 0.69 | 0.243269 |
Target: 5'- -cGACGCCUgGCCCCGCcccugugGCCauacccucUGCCACg -3' miRNA: 3'- aaUUGUGGG-CGGGGCGa------CGG--------GCGGUG- -5' |
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18387 | 3' | -62.6 | NC_004681.1 | + | 26210 | 0.67 | 0.347385 |
Target: 5'- -aAACGuCCUGgCCCGCcacggcggcgaUGCCCGCCc- -3' miRNA: 3'- aaUUGU-GGGCgGGGCG-----------ACGGGCGGug -5' |
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18387 | 3' | -62.6 | NC_004681.1 | + | 27872 | 0.75 | 0.095425 |
Target: 5'- -gAGCACCuuagCGCCgCCGCUG-CCGCCGCu -3' miRNA: 3'- aaUUGUGG----GCGG-GGCGACgGGCGGUG- -5' |
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18387 | 3' | -62.6 | NC_004681.1 | + | 28044 | 0.66 | 0.363459 |
Target: 5'- gUGACGCCagugauGCCacagCCGUUGCCgUGCCGCc -3' miRNA: 3'- aAUUGUGGg-----CGG----GGCGACGG-GCGGUG- -5' |
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18387 | 3' | -62.6 | NC_004681.1 | + | 28231 | 0.68 | 0.302264 |
Target: 5'- -cGAUcCgCCGCCgCCGUUGCCCGCgGg -3' miRNA: 3'- aaUUGuG-GGCGG-GGCGACGGGCGgUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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