miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18387 3' -62.6 NC_004681.1 + 13113 1.05 0.000442
Target:  5'- gUUAACACCCGCCCCGCUGCCCGCCACc -3'
miRNA:   3'- -AAUUGUGGGCGGGGCGACGGGCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 48561 0.76 0.0768
Target:  5'- -cAGCACCCaGCCCUGCUGCaucguggGCCACg -3'
miRNA:   3'- aaUUGUGGG-CGGGGCGACGgg-----CGGUG- -5'
18387 3' -62.6 NC_004681.1 + 27872 0.75 0.095425
Target:  5'- -gAGCACCuuagCGCCgCCGCUG-CCGCCGCu -3'
miRNA:   3'- aaUUGUGG----GCGG-GGCGACgGGCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 61505 0.74 0.109159
Target:  5'- -gAGCugCCGcCCCCGUUGCUguUGCCGCc -3'
miRNA:   3'- aaUUGugGGC-GGGGCGACGG--GCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 39593 0.73 0.121459
Target:  5'- aUGAguCCCGCCUCGCUGCCaccgGCCu- -3'
miRNA:   3'- aAUUguGGGCGGGGCGACGGg---CGGug -5'
18387 3' -62.6 NC_004681.1 + 33340 0.72 0.153568
Target:  5'- -gGGCACCCGCCCgcacaucaCGCUGgcugagaCCgGCCGCg -3'
miRNA:   3'- aaUUGUGGGCGGG--------GCGAC-------GGgCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 44045 0.72 0.162195
Target:  5'- -cAACACCUcCCaCUGCgggGCCUGCCACa -3'
miRNA:   3'- aaUUGUGGGcGG-GGCGa--CGGGCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 25303 0.71 0.189287
Target:  5'- -aAGCGgUCGCCgCCGUUGCCagCGCCGCc -3'
miRNA:   3'- aaUUGUgGGCGG-GGCGACGG--GCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 30866 0.7 0.204274
Target:  5'- ---cCGCCCGCcgaCCCGCUGgagcCCCGCgACa -3'
miRNA:   3'- aauuGUGGGCG---GGGCGAC----GGGCGgUG- -5'
18387 3' -62.6 NC_004681.1 + 7343 0.7 0.220278
Target:  5'- cUGAC-CCCGCCgCCGCggcgaagccuCCCGCCAa -3'
miRNA:   3'- aAUUGuGGGCGG-GGCGac--------GGGCGGUg -5'
18387 3' -62.6 NC_004681.1 + 25775 0.69 0.243269
Target:  5'- -cGACGCCUgGCCCCGCcccugugGCCauacccucUGCCACg -3'
miRNA:   3'- aaUUGUGGG-CGGGGCGa------CGG--------GCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 39835 0.69 0.255495
Target:  5'- --cGCACCgCGCgCaCCGC-GCCCGCgCGCg -3'
miRNA:   3'- aauUGUGG-GCG-G-GGCGaCGGGCG-GUG- -5'
18387 3' -62.6 NC_004681.1 + 43698 0.69 0.255495
Target:  5'- --cACAcCCCGCCgCCGCaGUacaCCGCCGCc -3'
miRNA:   3'- aauUGU-GGGCGG-GGCGaCG---GGCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 24663 0.69 0.255495
Target:  5'- -cGACaACCCGCCCgaGCUGaUCGCCAa -3'
miRNA:   3'- aaUUG-UGGGCGGGg-CGACgGGCGGUg -5'
18387 3' -62.6 NC_004681.1 + 64904 0.69 0.261795
Target:  5'- cUGGCAUCUcUCCCGCggcGCCCGCCu- -3'
miRNA:   3'- aAUUGUGGGcGGGGCGa--CGGGCGGug -5'
18387 3' -62.6 NC_004681.1 + 5193 0.69 0.261795
Target:  5'- --cGCGCCCGCCauggccgaGCUG-UCGCCACa -3'
miRNA:   3'- aauUGUGGGCGGgg------CGACgGGCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 7865 0.69 0.268221
Target:  5'- cUGACgaagaGCCCGCgCCCGUcgaUGagaCCGCCGCc -3'
miRNA:   3'- aAUUG-----UGGGCG-GGGCG---ACg--GGCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 10646 0.68 0.281453
Target:  5'- cUGACcgcuGCCUGgcgcCCCCGgUGCCCGCgGCc -3'
miRNA:   3'- aAUUG----UGGGC----GGGGCgACGGGCGgUG- -5'
18387 3' -62.6 NC_004681.1 + 23355 0.68 0.288261
Target:  5'- -aGGCGCCCGagguggucaaCCUC-CUGCCCGCCu- -3'
miRNA:   3'- aaUUGUGGGC----------GGGGcGACGGGCGGug -5'
18387 3' -62.6 NC_004681.1 + 61033 0.68 0.295198
Target:  5'- --cACGCCUccacugugGUUCCGCUGCCCGCgAa -3'
miRNA:   3'- aauUGUGGG--------CGGGGCGACGGGCGgUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.