Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18407 | 3' | -60.9 | NC_004681.1 | + | 39620 | 0.66 | 0.500373 |
Target: 5'- -cGCCGGGAuuGcCaGCCCGCUUGGGcCa -3' miRNA: 3'- uuCGGCCUU--CuGcCGGGCGGACUCuG- -5' |
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18407 | 3' | -60.9 | NC_004681.1 | + | 39986 | 0.66 | 0.490505 |
Target: 5'- -cGCUGGggGucuCcGCCCGCCUGGu-- -3' miRNA: 3'- uuCGGCCuuCu--GcCGGGCGGACUcug -5' |
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18407 | 3' | -60.9 | NC_004681.1 | + | 20529 | 0.66 | 0.490505 |
Target: 5'- -uGCUGuc-GAUGGUCgCGCCUGAGAUg -3' miRNA: 3'- uuCGGCcuuCUGCCGG-GCGGACUCUG- -5' |
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18407 | 3' | -60.9 | NC_004681.1 | + | 33005 | 0.66 | 0.490505 |
Target: 5'- --cCCGGuAG-CGGCCUGCCgaccucGGGACa -3' miRNA: 3'- uucGGCCuUCuGCCGGGCGGa-----CUCUG- -5' |
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18407 | 3' | -60.9 | NC_004681.1 | + | 5441 | 0.66 | 0.471046 |
Target: 5'- --aCCGGGAGGCGuGCCagCGCCUGuGcGCg -3' miRNA: 3'- uucGGCCUUCUGC-CGG--GCGGACuC-UG- -5' |
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18407 | 3' | -60.9 | NC_004681.1 | + | 61834 | 0.66 | 0.461465 |
Target: 5'- uGGCgCGcGAGGGCGGCCUcCUUGcGGACg -3' miRNA: 3'- uUCG-GC-CUUCUGCCGGGcGGAC-UCUG- -5' |
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18407 | 3' | -60.9 | NC_004681.1 | + | 8742 | 0.66 | 0.461465 |
Target: 5'- cGGGCCGcGAGGAaaucaGGUCCGC--GAGGCu -3' miRNA: 3'- -UUCGGC-CUUCUg----CCGGGCGgaCUCUG- -5' |
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18407 | 3' | -60.9 | NC_004681.1 | + | 35808 | 0.66 | 0.451987 |
Target: 5'- gGGGCgCGGccAGGACGaUCCGUCUGAGAg -3' miRNA: 3'- -UUCG-GCC--UUCUGCcGGGCGGACUCUg -5' |
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18407 | 3' | -60.9 | NC_004681.1 | + | 58228 | 0.66 | 0.442617 |
Target: 5'- gAGGCCGGggGACua-CCGCCaugGAGuCu -3' miRNA: 3'- -UUCGGCCuuCUGccgGGCGGa--CUCuG- -5' |
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18407 | 3' | -60.9 | NC_004681.1 | + | 48778 | 0.66 | 0.442617 |
Target: 5'- cGGCCcauGGGAGcUGGCCCGCCaGGGu- -3' miRNA: 3'- uUCGG---CCUUCuGCCGGGCGGaCUCug -5' |
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18407 | 3' | -60.9 | NC_004681.1 | + | 44239 | 0.67 | 0.424211 |
Target: 5'- cGGCCGGugAGGGCcaGGCCCGCggccucgggggUGAGGCa -3' miRNA: 3'- uUCGGCC--UUCUG--CCGGGCGg----------ACUCUG- -5' |
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18407 | 3' | -60.9 | NC_004681.1 | + | 41944 | 0.67 | 0.423303 |
Target: 5'- cAGGUCGGcuccgcgGAGAuCGGCCCGCUgcaGGGAa -3' miRNA: 3'- -UUCGGCC-------UUCU-GCCGGGCGGa--CUCUg -5' |
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18407 | 3' | -60.9 | NC_004681.1 | + | 18288 | 0.67 | 0.415182 |
Target: 5'- -cGCCGGGAGGCGcuccaggaCCGCCaggGAGAg -3' miRNA: 3'- uuCGGCCUUCUGCcg------GGCGGa--CUCUg -5' |
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18407 | 3' | -60.9 | NC_004681.1 | + | 42284 | 0.67 | 0.415182 |
Target: 5'- cGGCCuGGAAGAaGGCCCaGCUcGGGAg -3' miRNA: 3'- uUCGG-CCUUCUgCCGGG-CGGaCUCUg -5' |
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18407 | 3' | -60.9 | NC_004681.1 | + | 19632 | 0.67 | 0.415182 |
Target: 5'- -cGgCGaGGGugGGCaaGCCUGGGACg -3' miRNA: 3'- uuCgGCcUUCugCCGggCGGACUCUG- -5' |
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18407 | 3' | -60.9 | NC_004681.1 | + | 13586 | 0.67 | 0.406271 |
Target: 5'- aAGGCCGc-GGGCGGCCaCGCCaauGACg -3' miRNA: 3'- -UUCGGCcuUCUGCCGG-GCGGacuCUG- -5' |
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18407 | 3' | -60.9 | NC_004681.1 | + | 49011 | 0.67 | 0.406271 |
Target: 5'- -uGCUGGAuggucuuguacgGGACGGuCCCGCguagacgUGAGACa -3' miRNA: 3'- uuCGGCCU------------UCUGCC-GGGCGg------ACUCUG- -5' |
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18407 | 3' | -60.9 | NC_004681.1 | + | 5706 | 0.67 | 0.388815 |
Target: 5'- cGGGCUGGAGcGCGGCCUGUCgcucaugGAGuCg -3' miRNA: 3'- -UUCGGCCUUcUGCCGGGCGGa------CUCuG- -5' |
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18407 | 3' | -60.9 | NC_004681.1 | + | 7923 | 0.68 | 0.379427 |
Target: 5'- gGAGCCGGAAGAaguggUGGUcgaagagcccucuCUGUUUGAGACu -3' miRNA: 3'- -UUCGGCCUUCU-----GCCG-------------GGCGGACUCUG- -5' |
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18407 | 3' | -60.9 | NC_004681.1 | + | 2977 | 0.68 | 0.377736 |
Target: 5'- cGAGCgGGAGGGgGGCUucgucacggucgagCGCCUcgGGGACg -3' miRNA: 3'- -UUCGgCCUUCUgCCGG--------------GCGGA--CUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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