miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18407 5' -54.4 NC_004681.1 + 20427 1.14 0.000918
Target:  5'- uCCAUCUCAGGCGCGACCAUCGACAGCa -3'
miRNA:   3'- -GGUAGAGUCCGCGCUGGUAGCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 68898 0.8 0.193007
Target:  5'- gCCAUCg-AGGCGCuGACCAUCGucACGGCc -3'
miRNA:   3'- -GGUAGagUCCGCG-CUGGUAGC--UGUCG- -5'
18407 5' -54.4 NC_004681.1 + 58768 0.77 0.268961
Target:  5'- gCCAUCaggCAGGUGUGGCCcgCGGCgcaGGCg -3'
miRNA:   3'- -GGUAGa--GUCCGCGCUGGuaGCUG---UCG- -5'
18407 5' -54.4 NC_004681.1 + 34269 0.77 0.275026
Target:  5'- -aGUCUCAGGCGgGGCCuUCGGCuuugucgGGCa -3'
miRNA:   3'- ggUAGAGUCCGCgCUGGuAGCUG-------UCG- -5'
18407 5' -54.4 NC_004681.1 + 18372 0.77 0.288188
Target:  5'- gCCAUCgacauggcaggcCAGGCgGCGGCCG-CGGCGGCa -3'
miRNA:   3'- -GGUAGa-----------GUCCG-CGCUGGUaGCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 42351 0.76 0.342533
Target:  5'- gCCuUCcgCGGGCGgGACCAgcagcUCGGCGGCc -3'
miRNA:   3'- -GGuAGa-GUCCGCgCUGGU-----AGCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 20486 0.74 0.402097
Target:  5'- -gGUCUCAGGCG-GGCCGUCuucCGGCu -3'
miRNA:   3'- ggUAGAGUCCGCgCUGGUAGcu-GUCG- -5'
18407 5' -54.4 NC_004681.1 + 61783 0.73 0.467833
Target:  5'- uCCAUCUUGgagaccucGGCgGCGGCCuccgCGGCGGCg -3'
miRNA:   3'- -GGUAGAGU--------CCG-CGCUGGua--GCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 58894 0.73 0.467833
Target:  5'- cCCAgcaaCUCcuGGGCGCGcGCC-UCGACGGUg -3'
miRNA:   3'- -GGUa---GAG--UCCGCGC-UGGuAGCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 7968 0.72 0.538671
Target:  5'- cUCAUCgaCGGGCGCGGgCucuUCGuCAGCg -3'
miRNA:   3'- -GGUAGa-GUCCGCGCUgGu--AGCuGUCG- -5'
18407 5' -54.4 NC_004681.1 + 45166 0.71 0.570173
Target:  5'- aCCGUCgcgCAGGUGCaGucuuUCAUCGACcGCg -3'
miRNA:   3'- -GGUAGa--GUCCGCG-Cu---GGUAGCUGuCG- -5'
18407 5' -54.4 NC_004681.1 + 12723 0.71 0.580779
Target:  5'- aCGUCUUGGGCGUGuauGCCAUCua-GGCa -3'
miRNA:   3'- gGUAGAGUCCGCGC---UGGUAGcugUCG- -5'
18407 5' -54.4 NC_004681.1 + 51184 0.71 0.606385
Target:  5'- gUCGUCUUGGGCGCucuggacuucucucaGGCCGUCGAggaGGUc -3'
miRNA:   3'- -GGUAGAGUCCGCG---------------CUGGUAGCUg--UCG- -5'
18407 5' -54.4 NC_004681.1 + 50369 0.7 0.634256
Target:  5'- cCCuUCUUgcgguGGGCGCggGACCAg-GACAGCg -3'
miRNA:   3'- -GGuAGAG-----UCCGCG--CUGGUagCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 2214 0.7 0.634256
Target:  5'- aCAUCagCGGGgGUGGCCAguacccCGugGGCa -3'
miRNA:   3'- gGUAGa-GUCCgCGCUGGUa-----GCugUCG- -5'
18407 5' -54.4 NC_004681.1 + 3754 0.7 0.655695
Target:  5'- aCCAUCU-GGGCgGCGA-CGUCGAaGGCg -3'
miRNA:   3'- -GGUAGAgUCCG-CGCUgGUAGCUgUCG- -5'
18407 5' -54.4 NC_004681.1 + 23539 0.7 0.666388
Target:  5'- cCCAUCagaacugCGGGaGUGGCCGaggUCGACGGUg -3'
miRNA:   3'- -GGUAGa------GUCCgCGCUGGU---AGCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 30034 0.69 0.677051
Target:  5'- aCCGUCaUCGccgcCGCGGCCAUCGGCcucggAGCu -3'
miRNA:   3'- -GGUAG-AGUcc--GCGCUGGUAGCUG-----UCG- -5'
18407 5' -54.4 NC_004681.1 + 62792 0.69 0.708756
Target:  5'- uCCGcCUCAuccGGCGCcgacGACgCAUCGuCAGCa -3'
miRNA:   3'- -GGUaGAGU---CCGCG----CUG-GUAGCuGUCG- -5'
18407 5' -54.4 NC_004681.1 + 17115 0.69 0.708756
Target:  5'- -gAUCgCGGGCGCGuucuCCGaaauccuguUCGGCGGCc -3'
miRNA:   3'- ggUAGaGUCCGCGCu---GGU---------AGCUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.