miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18407 5' -54.4 NC_004681.1 + 2214 0.7 0.634256
Target:  5'- aCAUCagCGGGgGUGGCCAguacccCGugGGCa -3'
miRNA:   3'- gGUAGa-GUCCgCGCUGGUa-----GCugUCG- -5'
18407 5' -54.4 NC_004681.1 + 2959 0.66 0.842787
Target:  5'- aCCAg--CgAGGaccccgagauauuCGCGGCCAUCGAgCAGCc -3'
miRNA:   3'- -GGUagaG-UCC-------------GCGCUGGUAGCU-GUCG- -5'
18407 5' -54.4 NC_004681.1 + 3754 0.7 0.655695
Target:  5'- aCCAUCU-GGGCgGCGA-CGUCGAaGGCg -3'
miRNA:   3'- -GGUAGAgUCCG-CGCUgGUAGCUgUCG- -5'
18407 5' -54.4 NC_004681.1 + 5302 0.66 0.843634
Target:  5'- gCAUCUguGGCGacagcuCGGCCAU-GGCGGg -3'
miRNA:   3'- gGUAGAguCCGC------GCUGGUAgCUGUCg -5'
18407 5' -54.4 NC_004681.1 + 6502 0.66 0.835069
Target:  5'- gCCGgucgCUUcGGCGCcggGGCCuccucccccUCGACAGCg -3'
miRNA:   3'- -GGUa---GAGuCCGCG---CUGGu--------AGCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 7252 0.66 0.860123
Target:  5'- gCCAUC-CAcGaCGCGGCCGUCcaccuCGGCg -3'
miRNA:   3'- -GGUAGaGUcC-GCGCUGGUAGcu---GUCG- -5'
18407 5' -54.4 NC_004681.1 + 7704 0.66 0.864896
Target:  5'- gCCAUCgucggcgaagucgCGGGCGUagguGCCAUC-ACGGCc -3'
miRNA:   3'- -GGUAGa------------GUCCGCGc---UGGUAGcUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 7968 0.72 0.538671
Target:  5'- cUCAUCgaCGGGCGCGGgCucuUCGuCAGCg -3'
miRNA:   3'- -GGUAGa-GUCCGCGCUgGu--AGCuGUCG- -5'
18407 5' -54.4 NC_004681.1 + 12555 0.68 0.760027
Target:  5'- aCCG-CUCGuGGcCGgGGCC-UCGACGGUg -3'
miRNA:   3'- -GGUaGAGU-CC-GCgCUGGuAGCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 12723 0.71 0.580779
Target:  5'- aCGUCUUGGGCGUGuauGCCAUCua-GGCa -3'
miRNA:   3'- gGUAGAGUCCGCGC---UGGUAGcugUCG- -5'
18407 5' -54.4 NC_004681.1 + 13031 0.68 0.739817
Target:  5'- gCCG-CUCAGG-GCcuuuCCGUUGACAGUg -3'
miRNA:   3'- -GGUaGAGUCCgCGcu--GGUAGCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 15954 0.66 0.868032
Target:  5'- gCCAUCUCguucauugGGGUGUcGCCAUCcccGCGGUc -3'
miRNA:   3'- -GGUAGAG--------UCCGCGcUGGUAGc--UGUCG- -5'
18407 5' -54.4 NC_004681.1 + 16777 0.66 0.860123
Target:  5'- gCCGgugCUCGGa-GCG-CCGUCGcCAGCa -3'
miRNA:   3'- -GGUa--GAGUCcgCGCuGGUAGCuGUCG- -5'
18407 5' -54.4 NC_004681.1 + 17115 0.69 0.708756
Target:  5'- -gAUCgCGGGCGCGuucuCCGaaauccuguUCGGCGGCc -3'
miRNA:   3'- ggUAGaGUCCGCGCu---GGU---------AGCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 17566 0.66 0.851988
Target:  5'- uUCAaCUgGGGCagugacgccGCGGCCAagcgccgugguaUCGGCGGCu -3'
miRNA:   3'- -GGUaGAgUCCG---------CGCUGGU------------AGCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 17827 0.66 0.849504
Target:  5'- ---cCUCGGuGUugugcugcuugaccGCGGCCGUCGACuGGCg -3'
miRNA:   3'- gguaGAGUC-CG--------------CGCUGGUAGCUG-UCG- -5'
18407 5' -54.4 NC_004681.1 + 18372 0.77 0.288188
Target:  5'- gCCAUCgacauggcaggcCAGGCgGCGGCCG-CGGCGGCa -3'
miRNA:   3'- -GGUAGa-----------GUCCG-CGCUGGUaGCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 20427 1.14 0.000918
Target:  5'- uCCAUCUCAGGCGCGACCAUCGACAGCa -3'
miRNA:   3'- -GGUAGAGUCCGCGCUGGUAGCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 20486 0.74 0.402097
Target:  5'- -gGUCUCAGGCG-GGCCGUCuucCGGCu -3'
miRNA:   3'- ggUAGAGUCCGCgCUGGUAGcu-GUCG- -5'
18407 5' -54.4 NC_004681.1 + 23539 0.7 0.666388
Target:  5'- cCCAUCagaacugCGGGaGUGGCCGaggUCGACGGUg -3'
miRNA:   3'- -GGUAGa------GUCCgCGCUGGU---AGCUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.