miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18416 3' -54.3 NC_004681.1 + 22880 1.11 0.00127
Target:  5'- gUCACCAAGAGCUCCACCUACACGGACa -3'
miRNA:   3'- -AGUGGUUCUCGAGGUGGAUGUGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 23020 0.77 0.257139
Target:  5'- gUCGCCAAcGGGUUCCACCUGaACGGcCa -3'
miRNA:   3'- -AGUGGUU-CUCGAGGUGGAUgUGCCuG- -5'
18416 3' -54.3 NC_004681.1 + 336 0.75 0.321681
Target:  5'- uUCugCGAGGGCUgCACCguCAUGGGCg -3'
miRNA:   3'- -AGugGUUCUCGAgGUGGauGUGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 64416 0.74 0.361618
Target:  5'- uUCGCCAAggaugacGAGCUCCucuCCgaggGCugGGACc -3'
miRNA:   3'- -AGUGGUU-------CUCGAGGu--GGa---UGugCCUG- -5'
18416 3' -54.3 NC_004681.1 + 32524 0.74 0.362468
Target:  5'- cCACgAuGuGCUCCGCCUGCGCGGu- -3'
miRNA:   3'- aGUGgUuCuCGAGGUGGAUGUGCCug -5'
18416 3' -54.3 NC_004681.1 + 39083 0.74 0.379759
Target:  5'- gCGCCGugcaAGCccugguggCCACCUGCGCGGGCa -3'
miRNA:   3'- aGUGGUuc--UCGa-------GGUGGAUGUGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 6616 0.74 0.40671
Target:  5'- aCAUCAAGGGCUUCGCgCUGCaacugGCGGAg -3'
miRNA:   3'- aGUGGUUCUCGAGGUG-GAUG-----UGCCUg -5'
18416 3' -54.3 NC_004681.1 + 19376 0.73 0.454189
Target:  5'- aCACCGgccuGGGCgacggguacaUCCagACCUACACGGGCg -3'
miRNA:   3'- aGUGGUu---CUCG----------AGG--UGGAUGUGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 22413 0.71 0.545377
Target:  5'- aUCACCGGGGGCUuaCCGggcucacCCUGCgccaugACGGGCa -3'
miRNA:   3'- -AGUGGUUCUCGA--GGU-------GGAUG------UGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 2795 0.71 0.54644
Target:  5'- aCACCGcAGAGCUCUACCggACgcaaaccuACGGAg -3'
miRNA:   3'- aGUGGU-UCUCGAGGUGGa-UG--------UGCCUg -5'
18416 3' -54.3 NC_004681.1 + 30816 0.71 0.567823
Target:  5'- aCGCCAcggccuGGGC-CUACCUGCcCGGACc -3'
miRNA:   3'- aGUGGUu-----CUCGaGGUGGAUGuGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 7280 0.71 0.567823
Target:  5'- gCGCCGAGuGCgCCGCCUGCgACGaGCu -3'
miRNA:   3'- aGUGGUUCuCGaGGUGGAUG-UGCcUG- -5'
18416 3' -54.3 NC_004681.1 + 3937 0.7 0.600262
Target:  5'- aCACCGAGGGCUUCGCUggccugaaGCACcGGGa -3'
miRNA:   3'- aGUGGUUCUCGAGGUGGa-------UGUG-CCUg -5'
18416 3' -54.3 NC_004681.1 + 50953 0.7 0.61114
Target:  5'- -gGCCAAGuucGGCUaCACCUACGCcGACg -3'
miRNA:   3'- agUGGUUC---UCGAgGUGGAUGUGcCUG- -5'
18416 3' -54.3 NC_004681.1 + 62577 0.69 0.63294
Target:  5'- aCGCCGGGAGCg-CGCCgAgGCGGAg -3'
miRNA:   3'- aGUGGUUCUCGagGUGGaUgUGCCUg -5'
18416 3' -54.3 NC_004681.1 + 48233 0.69 0.63294
Target:  5'- cUCGCCGAG-GCU-CGCCaguccgAUACGGGCa -3'
miRNA:   3'- -AGUGGUUCuCGAgGUGGa-----UGUGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 19859 0.69 0.654737
Target:  5'- aCACC--GAGC-CCAagaccgaguCCUACAUGGACg -3'
miRNA:   3'- aGUGGuuCUCGaGGU---------GGAUGUGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 3368 0.69 0.654737
Target:  5'- gUCACC----GUUCCGCCUGCAgCGGAa -3'
miRNA:   3'- -AGUGGuucuCGAGGUGGAUGU-GCCUg -5'
18416 3' -54.3 NC_004681.1 + 59152 0.69 0.654737
Target:  5'- aCGCCGAGAagcgggacgGCaccuacgucgCCACCUAuguCACGGACg -3'
miRNA:   3'- aGUGGUUCU---------CGa---------GGUGGAU---GUGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 17464 0.69 0.654737
Target:  5'- cUCACCGAucauGGCUUCguGCCUgGCAUGGGCg -3'
miRNA:   3'- -AGUGGUUc---UCGAGG--UGGA-UGUGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.