miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18416 3' -54.3 NC_004681.1 + 336 0.75 0.321681
Target:  5'- uUCugCGAGGGCUgCACCguCAUGGGCg -3'
miRNA:   3'- -AGugGUUCUCGAgGUGGauGUGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 464 0.69 0.676451
Target:  5'- -gACCGcGGGCUCguCCU-CGCGGAUg -3'
miRNA:   3'- agUGGUuCUCGAGguGGAuGUGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 995 0.66 0.849786
Target:  5'- aCACCGauugggGGAGCUCCaugaagacgcacaugACCgcugacaaauacguCGCGGACg -3'
miRNA:   3'- aGUGGU------UCUCGAGG---------------UGGau------------GUGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 1373 0.68 0.698001
Target:  5'- uUCugCGAG-GCgguggCCACCUAU-CGGGCc -3'
miRNA:   3'- -AGugGUUCuCGa----GGUGGAUGuGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 2795 0.71 0.54644
Target:  5'- aCACCGcAGAGCUCUACCggACgcaaaccuACGGAg -3'
miRNA:   3'- aGUGGU-UCUCGAGGUGGa-UG--------UGCCUg -5'
18416 3' -54.3 NC_004681.1 + 3172 0.69 0.66561
Target:  5'- gCGCCGAGGaCUCCcauCUUGCGCaGGACu -3'
miRNA:   3'- aGUGGUUCUcGAGGu--GGAUGUG-CCUG- -5'
18416 3' -54.3 NC_004681.1 + 3368 0.69 0.654737
Target:  5'- gUCACC----GUUCCGCCUGCAgCGGAa -3'
miRNA:   3'- -AGUGGuucuCGAGGUGGAUGU-GCCUg -5'
18416 3' -54.3 NC_004681.1 + 3937 0.7 0.600262
Target:  5'- aCACCGAGGGCUUCGCUggccugaaGCACcGGGa -3'
miRNA:   3'- aGUGGUUCUCGAGGUGGa-------UGUG-CCUg -5'
18416 3' -54.3 NC_004681.1 + 5461 0.67 0.780803
Target:  5'- uUCGCCuucuGGGAGUgggUCGCCUcgACGCuGGACa -3'
miRNA:   3'- -AGUGG----UUCUCGa--GGUGGA--UGUG-CCUG- -5'
18416 3' -54.3 NC_004681.1 + 6616 0.74 0.40671
Target:  5'- aCAUCAAGGGCUUCGCgCUGCaacugGCGGAg -3'
miRNA:   3'- aGUGGUUCUCGAGGUG-GAUG-----UGCCUg -5'
18416 3' -54.3 NC_004681.1 + 7280 0.71 0.567823
Target:  5'- gCGCCGAGuGCgCCGCCUGCgACGaGCu -3'
miRNA:   3'- aGUGGUUCuCGaGGUGGAUG-UGCcUG- -5'
18416 3' -54.3 NC_004681.1 + 7310 0.67 0.770866
Target:  5'- aCGCCAGcGAcGUUCCACCcccgGCACccgGGGCu -3'
miRNA:   3'- aGUGGUU-CU-CGAGGUGGa---UGUG---CCUG- -5'
18416 3' -54.3 NC_004681.1 + 8368 0.67 0.750583
Target:  5'- cCACCGAG-GCUCUucagcaucuCCUGCGCGcGCu -3'
miRNA:   3'- aGUGGUUCuCGAGGu--------GGAUGUGCcUG- -5'
18416 3' -54.3 NC_004681.1 + 8990 0.66 0.835998
Target:  5'- -aGCCAGGAGCUggACCUcuuccuuGCGCuGGAUg -3'
miRNA:   3'- agUGGUUCUCGAggUGGA-------UGUG-CCUG- -5'
18416 3' -54.3 NC_004681.1 + 9242 0.69 0.676451
Target:  5'- -gACUggGAGCUCCugcGCCUGacgaaGGACg -3'
miRNA:   3'- agUGGuuCUCGAGG---UGGAUgug--CCUG- -5'
18416 3' -54.3 NC_004681.1 + 10796 0.68 0.719299
Target:  5'- aCACCGuggaagauGAGCUugucucCCGCCuUGCACGcGACg -3'
miRNA:   3'- aGUGGUu-------CUCGA------GGUGG-AUGUGC-CUG- -5'
18416 3' -54.3 NC_004681.1 + 11682 0.69 0.654737
Target:  5'- -aGCCGgauGGCUCCACCaGCcugGCGGACu -3'
miRNA:   3'- agUGGUuc-UCGAGGUGGaUG---UGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 13530 0.66 0.845537
Target:  5'- cCGCCGuGGuucGCUCCGCCaucgccauCAUGGGCg -3'
miRNA:   3'- aGUGGUuCU---CGAGGUGGau------GUGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 15691 0.67 0.760789
Target:  5'- aCGCCucGGAGgUCauggaCACCUAC-CGGGCg -3'
miRNA:   3'- aGUGGu-UCUCgAG-----GUGGAUGuGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 15724 0.66 0.828003
Target:  5'- gUCuuCC-AGAGCUCCAUCgucuuCGCGGuCg -3'
miRNA:   3'- -AGu-GGuUCUCGAGGUGGau---GUGCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.