miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18521 3' -53.8 NC_004681.1 + 7270 0.68 0.762051
Target:  5'- gUCcACCUCgGCGCcGaGUGCGCcgccuGCGACg -3'
miRNA:   3'- -AGuUGGAG-CGCGaCaUACGCG-----CGUUG- -5'
18521 3' -53.8 NC_004681.1 + 7501 0.69 0.677107
Target:  5'- gUCGauGCCUgG-GcCUGgGUGCGCGCGACg -3'
miRNA:   3'- -AGU--UGGAgCgC-GACaUACGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 8806 0.72 0.493479
Target:  5'- gCGACCgcggCgGCGUUGU-UGUGCGCAGCc -3'
miRNA:   3'- aGUUGGa---G-CGCGACAuACGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 8975 0.68 0.720277
Target:  5'- cUCGGCCUCuCGCUGUucgGCGC-CAc- -3'
miRNA:   3'- -AGUUGGAGcGCGACAua-CGCGcGUug -5'
18521 3' -53.8 NC_004681.1 + 10722 0.67 0.782187
Target:  5'- gUCAcACCUgGUGCUGg--GCGUccGCGACc -3'
miRNA:   3'- -AGU-UGGAgCGCGACauaCGCG--CGUUG- -5'
18521 3' -53.8 NC_004681.1 + 14440 0.68 0.720277
Target:  5'- -uGGCCUCGa--UGUucuugGCGCGCAGCu -3'
miRNA:   3'- agUUGGAGCgcgACAua---CGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 16203 0.68 0.762051
Target:  5'- aCAGCCguggCG-GCUGU--GCGCGCcGCg -3'
miRNA:   3'- aGUUGGa---GCgCGACAuaCGCGCGuUG- -5'
18521 3' -53.8 NC_004681.1 + 17441 0.69 0.686904
Target:  5'- -aGACCUugagucaggucgcCGCGCUGauccUGCGUGUAGCg -3'
miRNA:   3'- agUUGGA-------------GCGCGACau--ACGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 17831 0.66 0.838525
Target:  5'- gCGACCUCgGUGUUGUGcUGCuugacCGCGGCc -3'
miRNA:   3'- aGUUGGAG-CGCGACAU-ACGc----GCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 27612 0.67 0.801701
Target:  5'- gUCAcCCUCggugGCGCUGgcgGCG-GCGGCg -3'
miRNA:   3'- -AGUuGGAG----CGCGACauaCGCgCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 29825 0.71 0.55681
Target:  5'- cUCGAaagCGCGCgUGUAucagcUGCGCGCGGCc -3'
miRNA:   3'- -AGUUggaGCGCG-ACAU-----ACGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 30055 0.68 0.719212
Target:  5'- aUCGGCCUCGgagcuccCGCUGU---CGCGCAGg -3'
miRNA:   3'- -AGUUGGAGC-------GCGACAuacGCGCGUUg -5'
18521 3' -53.8 NC_004681.1 + 30342 0.67 0.772191
Target:  5'- cCGGCCgcCGcCGCUGUG-GCGgGCGAUc -3'
miRNA:   3'- aGUUGGa-GC-GCGACAUaCGCgCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 39214 0.71 0.589374
Target:  5'- gUCAGCCUgGuCGaCUGUcagcucaccGUGCGCcGCGGCa -3'
miRNA:   3'- -AGUUGGAgC-GC-GACA---------UACGCG-CGUUG- -5'
18521 3' -53.8 NC_004681.1 + 39945 0.66 0.847213
Target:  5'- -gAACUUgGCGCgcgcgGgcgcgGUGCGCGCGguGCg -3'
miRNA:   3'- agUUGGAgCGCGa----Ca----UACGCGCGU--UG- -5'
18521 3' -53.8 NC_004681.1 + 42026 0.67 0.798817
Target:  5'- cCAACCUCGUGCgcgccaaccugaGCaGUGCAGCg -3'
miRNA:   3'- aGUUGGAGCGCGacaua-------CG-CGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 43296 0.65 0.860643
Target:  5'- gCuuCUUCGCGCUGUuguuuugucugaGCGUGUGGCa -3'
miRNA:   3'- aGuuGGAGCGCGACAua----------CGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 44806 0.68 0.741384
Target:  5'- gUggUgaCGCGCUugGUGCGCGUGACg -3'
miRNA:   3'- aGuuGgaGCGCGAcaUACGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 46760 0.68 0.751778
Target:  5'- -gGACCg-GCGCUGc--GCGCGCAcgGCg -3'
miRNA:   3'- agUUGGagCGCGACauaCGCGCGU--UG- -5'
18521 3' -53.8 NC_004681.1 + 46868 0.68 0.709587
Target:  5'- -uGACCgUGaCGCcGUGcGCGCGCAGCg -3'
miRNA:   3'- agUUGGaGC-GCGaCAUaCGCGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.