miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18521 3' -53.8 NC_004681.1 + 66077 1.11 0.00128
Target:  5'- aUCAACCUCGCGCUGUAUGCGCGCAACg -3'
miRNA:   3'- -AGUUGGAGCGCGACAUACGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 43296 0.65 0.860643
Target:  5'- gCuuCUUCGCGCUGUuguuuugucugaGCGUGUGGCa -3'
miRNA:   3'- aGuuGGAGCGCGACAua----------CGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 27612 0.67 0.801701
Target:  5'- gUCAcCCUCggugGCGCUGgcgGCG-GCGGCg -3'
miRNA:   3'- -AGUuGGAG----CGCGACauaCGCgCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 42026 0.67 0.798817
Target:  5'- cCAACCUCGUGCgcgccaaccugaGCaGUGCAGCg -3'
miRNA:   3'- aGUUGGAGCGCGacaua-------CG-CGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 10722 0.67 0.782187
Target:  5'- gUCAcACCUgGUGCUGg--GCGUccGCGACc -3'
miRNA:   3'- -AGU-UGGAgCGCGACauaCGCG--CGUUG- -5'
18521 3' -53.8 NC_004681.1 + 7270 0.68 0.762051
Target:  5'- gUCcACCUCgGCGCcGaGUGCGCcgccuGCGACg -3'
miRNA:   3'- -AGuUGGAG-CGCGaCaUACGCG-----CGUUG- -5'
18521 3' -53.8 NC_004681.1 + 46760 0.68 0.751778
Target:  5'- -gGACCg-GCGCUGc--GCGCGCAcgGCg -3'
miRNA:   3'- agUUGGagCGCGACauaCGCGCGU--UG- -5'
18521 3' -53.8 NC_004681.1 + 8975 0.68 0.720277
Target:  5'- cUCGGCCUCuCGCUGUucgGCGC-CAc- -3'
miRNA:   3'- -AGUUGGAGcGCGACAua-CGCGcGUug -5'
18521 3' -53.8 NC_004681.1 + 30055 0.68 0.719212
Target:  5'- aUCGGCCUCGgagcuccCGCUGU---CGCGCAGg -3'
miRNA:   3'- -AGUUGGAGC-------GCGACAuacGCGCGUUg -5'
18521 3' -53.8 NC_004681.1 + 61357 0.69 0.698821
Target:  5'- aUCGGCC-CGuCGCUGcg-GUGgGCAACa -3'
miRNA:   3'- -AGUUGGaGC-GCGACauaCGCgCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 7501 0.69 0.677107
Target:  5'- gUCGauGCCUgG-GcCUGgGUGCGCGCGACg -3'
miRNA:   3'- -AGU--UGGAgCgC-GACaUACGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 39214 0.71 0.589374
Target:  5'- gUCAGCCUgGuCGaCUGUcagcucaccGUGCGCcGCGGCa -3'
miRNA:   3'- -AGUUGGAgC-GC-GACA---------UACGCG-CGUUG- -5'
18521 3' -53.8 NC_004681.1 + 47171 0.71 0.55681
Target:  5'- aCAACCUCGaCGCcaagGUGgugGCGgGCAAg -3'
miRNA:   3'- aGUUGGAGC-GCGa---CAUa--CGCgCGUUg -5'
18521 3' -53.8 NC_004681.1 + 65070 0.68 0.720277
Target:  5'- cCAACUUCGCGUaGUcGUGCGgGUAGu -3'
miRNA:   3'- aGUUGGAGCGCGaCA-UACGCgCGUUg -5'
18521 3' -53.8 NC_004681.1 + 14440 0.68 0.720277
Target:  5'- -uGGCCUCGa--UGUucuugGCGCGCAGCu -3'
miRNA:   3'- agUUGGAGCgcgACAua---CGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 46868 0.68 0.709587
Target:  5'- -uGACCgUGaCGCcGUGcGCGCGCAGCg -3'
miRNA:   3'- agUUGGaGC-GCGaCAUaCGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 61762 0.69 0.689076
Target:  5'- gCGGCCUC-CGCggcggcggcuucUGCGCGCAGCu -3'
miRNA:   3'- aGUUGGAGcGCGacau--------ACGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 17441 0.69 0.686904
Target:  5'- -aGACCUugagucaggucgcCGCGCUGauccUGCGUGUAGCg -3'
miRNA:   3'- agUUGGA-------------GCGCGACau--ACGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 29825 0.71 0.55681
Target:  5'- cUCGAaagCGCGCgUGUAucagcUGCGCGCGGCc -3'
miRNA:   3'- -AGUUggaGCGCG-ACAU-----ACGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 52216 0.66 0.855677
Target:  5'- --cACCUUGagGCUGcgggagAUGUGCGCAAUg -3'
miRNA:   3'- aguUGGAGCg-CGACa-----UACGCGCGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.