miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18523 5' -53.9 NC_004681.1 + 19835 0.66 0.883671
Target:  5'- gGGGCGAUcagcaACGGCCUGauccaUGUGUg -3'
miRNA:   3'- -CCUGCUAagacaUGCCGGACg----ACGCG- -5'
18523 5' -53.9 NC_004681.1 + 16299 0.66 0.883671
Target:  5'- uGGCcGUUCUGcuUGGCCUGCUcUGCc -3'
miRNA:   3'- cCUGcUAAGACauGCCGGACGAcGCG- -5'
18523 5' -53.9 NC_004681.1 + 17085 0.66 0.875425
Target:  5'- cGGugGAUUCUGgGCucagaugGGCCagaagaucGCggGCGCg -3'
miRNA:   3'- -CCugCUAAGACaUG-------CCGGa-------CGa-CGCG- -5'
18523 5' -53.9 NC_004681.1 + 38904 0.66 0.860494
Target:  5'- cGGAUGG-UCUcgGCGGaCUUGC-GCGCg -3'
miRNA:   3'- -CCUGCUaAGAcaUGCC-GGACGaCGCG- -5'
18523 5' -53.9 NC_004681.1 + 66851 0.66 0.852298
Target:  5'- aGGCGGcgUUGccacCGGCCUuCUGCGCa -3'
miRNA:   3'- cCUGCUaaGACau--GCCGGAcGACGCG- -5'
18523 5' -53.9 NC_004681.1 + 37061 0.66 0.852298
Target:  5'- aGGGCG-UUCcgGUgACGGCC-GCcGCGUg -3'
miRNA:   3'- -CCUGCuAAGa-CA-UGCCGGaCGaCGCG- -5'
18523 5' -53.9 NC_004681.1 + 1049 0.66 0.847273
Target:  5'- cGGACGccgagaggaUGUACGGCCcgauggagcccugGCaGCGCg -3'
miRNA:   3'- -CCUGCuaag-----ACAUGCCGGa------------CGaCGCG- -5'
18523 5' -53.9 NC_004681.1 + 14492 0.66 0.84388
Target:  5'- aGGGCGcg-CUGgu-GGCCggUGCUGgCGCg -3'
miRNA:   3'- -CCUGCuaaGACaugCCGG--ACGAC-GCG- -5'
18523 5' -53.9 NC_004681.1 + 23177 0.66 0.84388
Target:  5'- uGAUGA-UCUGcUGCuGGuCCUGC-GCGCg -3'
miRNA:   3'- cCUGCUaAGAC-AUG-CC-GGACGaCGCG- -5'
18523 5' -53.9 NC_004681.1 + 66980 0.66 0.84388
Target:  5'- gGGACag-UCacGU-CGGCCUGCacGCGCg -3'
miRNA:   3'- -CCUGcuaAGa-CAuGCCGGACGa-CGCG- -5'
18523 5' -53.9 NC_004681.1 + 61219 0.67 0.835246
Target:  5'- cGACGGUgaagUUGgcgACGGCCUGCccaccuUGgGUg -3'
miRNA:   3'- cCUGCUAa---GACa--UGCCGGACG------ACgCG- -5'
18523 5' -53.9 NC_004681.1 + 26790 0.67 0.834372
Target:  5'- cGGugG-UUCUGUcaacuucaccgcgGCGGCCaacGCUGaCGUc -3'
miRNA:   3'- -CCugCuAAGACA-------------UGCCGGa--CGAC-GCG- -5'
18523 5' -53.9 NC_004681.1 + 20639 0.67 0.826407
Target:  5'- cGGCGGUUgcugcgUUGUACgGGUCUGCgcggagGCGUg -3'
miRNA:   3'- cCUGCUAA------GACAUG-CCGGACGa-----CGCG- -5'
18523 5' -53.9 NC_004681.1 + 66929 0.67 0.826407
Target:  5'- --uUGAcUCUGUgGCGGCCcuggUGCcGCGCg -3'
miRNA:   3'- ccuGCUaAGACA-UGCCGG----ACGaCGCG- -5'
18523 5' -53.9 NC_004681.1 + 9937 0.67 0.817369
Target:  5'- cGGAUGAUgCUGcaACGGcCCUGUccUGgGCg -3'
miRNA:   3'- -CCUGCUAaGACa-UGCC-GGACG--ACgCG- -5'
18523 5' -53.9 NC_004681.1 + 40377 0.67 0.817369
Target:  5'- uGGCuucggCUGUACuGGCuaCUGCUGUGCg -3'
miRNA:   3'- cCUGcuaa-GACAUG-CCG--GACGACGCG- -5'
18523 5' -53.9 NC_004681.1 + 66101 0.67 0.79874
Target:  5'- -aACGAg---G-ACGGCCUGCUGCa- -3'
miRNA:   3'- ccUGCUaagaCaUGCCGGACGACGcg -5'
18523 5' -53.9 NC_004681.1 + 9946 0.68 0.779438
Target:  5'- uGGGcCGGUUCgucuucgccuUGCGGCC-GCUGCGg -3'
miRNA:   3'- -CCU-GCUAAGac--------AUGCCGGaCGACGCg -5'
18523 5' -53.9 NC_004681.1 + 49414 0.68 0.779438
Target:  5'- cGGACGGUgaggUUGUGCagaccGCCcGCcuUGCGCg -3'
miRNA:   3'- -CCUGCUAa---GACAUGc----CGGaCG--ACGCG- -5'
18523 5' -53.9 NC_004681.1 + 38997 0.68 0.773528
Target:  5'- cGACGAggaaggcgucaacgUCg--ACGGCCUGCugguggUGCGCc -3'
miRNA:   3'- cCUGCUa-------------AGacaUGCCGGACG------ACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.