miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18524 3' -53 NC_004681.1 + 1414 0.71 0.671362
Target:  5'- gCAGCCCUugUcGgcGAG-GuCGUCGGCc -3'
miRNA:   3'- -GUCGGGAugA-CuuCUUgCuGCAGCCG- -5'
18524 3' -53 NC_004681.1 + 1945 0.66 0.908746
Target:  5'- uCGGCCUU-CguugGAaccuucaacacguAGAugGACGUCGGg -3'
miRNA:   3'- -GUCGGGAuGa---CU-------------UCUugCUGCAGCCg -5'
18524 3' -53 NC_004681.1 + 2837 0.66 0.909391
Target:  5'- aCGGCCCacaGgUGAuggucGGAgGCGACGaguUCGGCg -3'
miRNA:   3'- -GUCGGGa--UgACU-----UCU-UGCUGC---AGCCG- -5'
18524 3' -53 NC_004681.1 + 3066 0.66 0.881549
Target:  5'- gCAGUCCUGCgcAAGAugGGaguccUCGGCg -3'
miRNA:   3'- -GUCGGGAUGacUUCUugCUgc---AGCCG- -5'
18524 3' -53 NC_004681.1 + 3238 0.73 0.541727
Target:  5'- aGGCCCUGgaGGAGGGCGAgcCGcUgGGCg -3'
miRNA:   3'- gUCGGGAUgaCUUCUUGCU--GC-AgCCG- -5'
18524 3' -53 NC_004681.1 + 5788 0.69 0.755833
Target:  5'- cCAGCCCgucagggUUGAAGAagcggaucggcACGAccucguCGUCGGCg -3'
miRNA:   3'- -GUCGGGau-----GACUUCU-----------UGCU------GCAGCCG- -5'
18524 3' -53 NC_004681.1 + 7421 0.68 0.804978
Target:  5'- uCAGCCCcgggUGCcGggGGugGAaCGUCgcuGGCg -3'
miRNA:   3'- -GUCGGG----AUGaCuuCUugCU-GCAG---CCG- -5'
18524 3' -53 NC_004681.1 + 8508 0.66 0.909391
Target:  5'- -uGCCCUuCUc--GAACGACGU-GGCg -3'
miRNA:   3'- guCGGGAuGAcuuCUUGCUGCAgCCG- -5'
18524 3' -53 NC_004681.1 + 9797 0.66 0.89599
Target:  5'- aAGCCaaGCUGGucgAGGACGAgGUCGa- -3'
miRNA:   3'- gUCGGgaUGACU---UCUUGCUgCAGCcg -5'
18524 3' -53 NC_004681.1 + 12943 0.67 0.853064
Target:  5'- aGGCCCUgagcggcaacgucacGCUGAccGGccUGACGUCGcGCu -3'
miRNA:   3'- gUCGGGA---------------UGACU--UCuuGCUGCAGC-CG- -5'
18524 3' -53 NC_004681.1 + 14242 0.66 0.888897
Target:  5'- -uGCCCUGCaccuucugcaGAAGGGCGgACGUCGcuGCc -3'
miRNA:   3'- guCGGGAUGa---------CUUCUUGC-UGCAGC--CG- -5'
18524 3' -53 NC_004681.1 + 14504 0.66 0.915693
Target:  5'- uCGGCcgCCUGCUugcgcuUGGCGUCGGCg -3'
miRNA:   3'- -GUCG--GGAUGAcuucuuGCUGCAGCCG- -5'
18524 3' -53 NC_004681.1 + 14572 0.73 0.563011
Target:  5'- -cGCCCUGCUcggcGGAG-GCGGCGcgcgCGGCg -3'
miRNA:   3'- guCGGGAUGA----CUUCuUGCUGCa---GCCG- -5'
18524 3' -53 NC_004681.1 + 15011 0.73 0.552338
Target:  5'- aAGgCgUACUGGAacugcGAgGCGACGUCGGCg -3'
miRNA:   3'- gUCgGgAUGACUU-----CU-UGCUGCAGCCG- -5'
18524 3' -53 NC_004681.1 + 15050 0.68 0.795461
Target:  5'- gAGCCCaugaGCUGGucGAugGGCGccUUGGCg -3'
miRNA:   3'- gUCGGGa---UGACUu-CUugCUGC--AGCCG- -5'
18524 3' -53 NC_004681.1 + 15196 0.7 0.703605
Target:  5'- -uGUCCaagcaGCUGAAGGACcccaACGUCGGCc -3'
miRNA:   3'- guCGGGa----UGACUUCUUGc---UGCAGCCG- -5'
18524 3' -53 NC_004681.1 + 16760 0.66 0.915693
Target:  5'- cCGGUCCUGcCUGucG-AC-ACGUCGGUg -3'
miRNA:   3'- -GUCGGGAU-GACuuCuUGcUGCAGCCG- -5'
18524 3' -53 NC_004681.1 + 17298 0.7 0.738353
Target:  5'- -cGCCCUGCUGGcgcgcgugcccgcGGGACGcuacacgcaggaucaGCG-CGGCg -3'
miRNA:   3'- guCGGGAUGACU-------------UCUUGC---------------UGCaGCCG- -5'
18524 3' -53 NC_004681.1 + 20387 0.68 0.815241
Target:  5'- cCAGCUuucaaaCUGCUGcAGGAGCGGCGggacguuguuguucgUGGCg -3'
miRNA:   3'- -GUCGG------GAUGAC-UUCUUGCUGCa--------------GCCG- -5'
18524 3' -53 NC_004681.1 + 22637 0.7 0.714231
Target:  5'- uGGCCUcgucgUACUGGAGGAUGAaucCGUCuGCg -3'
miRNA:   3'- gUCGGG-----AUGACUUCUUGCU---GCAGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.