miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18524 3' -53 NC_004681.1 + 1945 0.66 0.908746
Target:  5'- uCGGCCUU-CguugGAaccuucaacacguAGAugGACGUCGGg -3'
miRNA:   3'- -GUCGGGAuGa---CU-------------UCUugCUGCAGCCg -5'
18524 3' -53 NC_004681.1 + 44980 0.67 0.838574
Target:  5'- gAGCCCUGCUGcauccucggccucguGGGCGuCGcccgcuUCGGCa -3'
miRNA:   3'- gUCGGGAUGACuu-------------CUUGCuGC------AGCCG- -5'
18524 3' -53 NC_004681.1 + 64922 0.67 0.841177
Target:  5'- -cGCCCgcCUGGAGcACGAgGU-GGCg -3'
miRNA:   3'- guCGGGauGACUUCuUGCUgCAgCCG- -5'
18524 3' -53 NC_004681.1 + 12943 0.67 0.853064
Target:  5'- aGGCCCUgagcggcaacgucacGCUGAccGGccUGACGUCGcGCu -3'
miRNA:   3'- gUCGGGA---------------UGACU--UCuuGCUGCAGC-CG- -5'
18524 3' -53 NC_004681.1 + 29610 0.67 0.866106
Target:  5'- -cGCUCUGCUGAAcucuGAuggcuCGACGUCGa- -3'
miRNA:   3'- guCGGGAUGACUU----CUu----GCUGCAGCcg -5'
18524 3' -53 NC_004681.1 + 3066 0.66 0.881549
Target:  5'- gCAGUCCUGCgcAAGAugGGaguccUCGGCg -3'
miRNA:   3'- -GUCGGGAUGacUUCUugCUgc---AGCCG- -5'
18524 3' -53 NC_004681.1 + 53617 0.66 0.881549
Target:  5'- aGGCCCagACgGAggccaAGAACGACGgcgcccuggUCGGUg -3'
miRNA:   3'- gUCGGGa-UGaCU-----UCUUGCUGC---------AGCCG- -5'
18524 3' -53 NC_004681.1 + 66940 0.66 0.894592
Target:  5'- gCGGCCCUggugccgcgcgccgaGCUcGAAG-GCGAcaucggggacagucaCGUCGGCc -3'
miRNA:   3'- -GUCGGGA---------------UGA-CUUCuUGCU---------------GCAGCCG- -5'
18524 3' -53 NC_004681.1 + 9797 0.66 0.89599
Target:  5'- aAGCCaaGCUGGucgAGGACGAgGUCGa- -3'
miRNA:   3'- gUCGGgaUGACU---UCUUGCUgCAGCcg -5'
18524 3' -53 NC_004681.1 + 58261 0.68 0.832426
Target:  5'- uGGCCUcACcGAAGAcgaGCGACGUCaGUu -3'
miRNA:   3'- gUCGGGaUGaCUUCU---UGCUGCAGcCG- -5'
18524 3' -53 NC_004681.1 + 27978 0.68 0.814318
Target:  5'- -uGCUCU-CUGGAGccAACGGCGgcaaCGGCg -3'
miRNA:   3'- guCGGGAuGACUUC--UUGCUGCa---GCCG- -5'
18524 3' -53 NC_004681.1 + 28125 0.69 0.785777
Target:  5'- aCGGCCCcGC-GGGcAACGGCGgCGGCg -3'
miRNA:   3'- -GUCGGGaUGaCUUcUUGCUGCaGCCG- -5'
18524 3' -53 NC_004681.1 + 30407 0.75 0.440372
Target:  5'- -cGCUUUAUcGGAGAGCG-CGUCGGCa -3'
miRNA:   3'- guCGGGAUGaCUUCUUGCuGCAGCCG- -5'
18524 3' -53 NC_004681.1 + 62673 0.73 0.563011
Target:  5'- -uGCaCCUACUGcuGAcgauGCGuCGUCGGCg -3'
miRNA:   3'- guCG-GGAUGACuuCU----UGCuGCAGCCG- -5'
18524 3' -53 NC_004681.1 + 27781 0.72 0.573738
Target:  5'- gCGGCgCUAaggugcucacuuCUGGAGAugGGCG-CGGCg -3'
miRNA:   3'- -GUCGgGAU------------GACUUCUugCUGCaGCCG- -5'
18524 3' -53 NC_004681.1 + 45515 0.72 0.573738
Target:  5'- --cCCCUACUacAAGGGCGACGaCGGCg -3'
miRNA:   3'- gucGGGAUGAc-UUCUUGCUGCaGCCG- -5'
18524 3' -53 NC_004681.1 + 50131 0.7 0.68216
Target:  5'- -cGCCCUcGCUGAcGAcgGCGGCaucuccguccaaGUCGGCa -3'
miRNA:   3'- guCGGGA-UGACUuCU--UGCUG------------CAGCCG- -5'
18524 3' -53 NC_004681.1 + 15196 0.7 0.703605
Target:  5'- -uGUCCaagcaGCUGAAGGACcccaACGUCGGCc -3'
miRNA:   3'- guCGGGa----UGACUUCUUGc---UGCAGCCG- -5'
18524 3' -53 NC_004681.1 + 17298 0.7 0.738353
Target:  5'- -cGCCCUGCUGGcgcgcgugcccgcGGGACGcuacacgcaggaucaGCG-CGGCg -3'
miRNA:   3'- guCGGGAUGACU-------------UCUUGC---------------UGCaGCCG- -5'
18524 3' -53 NC_004681.1 + 40607 0.69 0.74559
Target:  5'- aAGCCU---UGAAGGGCGACGUugaUGGUg -3'
miRNA:   3'- gUCGGGaugACUUCUUGCUGCA---GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.