Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18525 | 3' | -54.5 | NC_004681.1 | + | 68423 | 1.12 | 0.001167 |
Target: 5'- aCCAGGUCAACCAGGACGGCACUCUACu -3' miRNA: 3'- -GGUCCAGUUGGUCCUGCCGUGAGAUG- -5' |
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18525 | 3' | -54.5 | NC_004681.1 | + | 16688 | 0.75 | 0.324225 |
Target: 5'- gCAGGUCGACCgGGGACGccgggggcuuguaGCGCUCgucgGCa -3' miRNA: 3'- gGUCCAGUUGG-UCCUGC-------------CGUGAGa---UG- -5' |
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18525 | 3' | -54.5 | NC_004681.1 | + | 60005 | 0.74 | 0.382965 |
Target: 5'- gCGGGUCcucaAGCCcGGugGGCAC-CUGCu -3' miRNA: 3'- gGUCCAG----UUGGuCCugCCGUGaGAUG- -5' |
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18525 | 3' | -54.5 | NC_004681.1 | + | 12576 | 0.73 | 0.466891 |
Target: 5'- cCCGGGUCAAacaccuucCCGGGcACGGCuCUCUu- -3' miRNA: 3'- -GGUCCAGUU--------GGUCC-UGCCGuGAGAug -5' |
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18525 | 3' | -54.5 | NC_004681.1 | + | 47469 | 0.72 | 0.483797 |
Target: 5'- aUCAGGUCGccGCguGcGACGGCcacuacaagucgcuGCUCUACa -3' miRNA: 3'- -GGUCCAGU--UGguC-CUGCCG--------------UGAGAUG- -5' |
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18525 | 3' | -54.5 | NC_004681.1 | + | 16182 | 0.71 | 0.547707 |
Target: 5'- gCCGcGGUgGugacgccACCgAGGGCGGCAgUCUGCg -3' miRNA: 3'- -GGU-CCAgU-------UGG-UCCUGCCGUgAGAUG- -5' |
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18525 | 3' | -54.5 | NC_004681.1 | + | 747 | 0.71 | 0.569986 |
Target: 5'- uCCAGGUCGACC-GGAuCGGCG-UCg-- -3' miRNA: 3'- -GGUCCAGUUGGuCCU-GCCGUgAGaug -5' |
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18525 | 3' | -54.5 | NC_004681.1 | + | 37297 | 0.71 | 0.580675 |
Target: 5'- gCCGGGUCAGcuCCAGGAUGG-GCUUg-- -3' miRNA: 3'- -GGUCCAGUU--GGUCCUGCCgUGAGaug -5' |
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18525 | 3' | -54.5 | NC_004681.1 | + | 995 | 0.7 | 0.591405 |
Target: 5'- -gAGG-CGgacGCCAGGGCGGCuucccgcucuCUCUGCa -3' miRNA: 3'- ggUCCaGU---UGGUCCUGCCGu---------GAGAUG- -5' |
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18525 | 3' | -54.5 | NC_004681.1 | + | 65285 | 0.7 | 0.591405 |
Target: 5'- aCCAGG-CGuCCAGG-UGGCGCUUgGCg -3' miRNA: 3'- -GGUCCaGUuGGUCCuGCCGUGAGaUG- -5' |
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18525 | 3' | -54.5 | NC_004681.1 | + | 5624 | 0.7 | 0.634572 |
Target: 5'- uCCAGGcCGguGCCGGuGugGGCACgcagCUGg -3' miRNA: 3'- -GGUCCaGU--UGGUC-CugCCGUGa---GAUg -5' |
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18525 | 3' | -54.5 | NC_004681.1 | + | 48748 | 0.69 | 0.645381 |
Target: 5'- uCCuuGGUCcagcaccuCCAGGACGGCGg-CUACa -3' miRNA: 3'- -GGu-CCAGuu------GGUCCUGCCGUgaGAUG- -5' |
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18525 | 3' | -54.5 | NC_004681.1 | + | 7580 | 0.69 | 0.645381 |
Target: 5'- gCCGGGgaGGCCGuGAUGGCAC-CUACg -3' miRNA: 3'- -GGUCCagUUGGUcCUGCCGUGaGAUG- -5' |
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18525 | 3' | -54.5 | NC_004681.1 | + | 46941 | 0.69 | 0.645381 |
Target: 5'- aUCGGGgu-GCCGGGGCGGUugccGCggggCUGCg -3' miRNA: 3'- -GGUCCaguUGGUCCUGCCG----UGa---GAUG- -5' |
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18525 | 3' | -54.5 | NC_004681.1 | + | 63905 | 0.69 | 0.668031 |
Target: 5'- cCCAGGUUAugCAGGuucgaguccugucgGGCGCUCg-- -3' miRNA: 3'- -GGUCCAGUugGUCCug------------CCGUGAGaug -5' |
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18525 | 3' | -54.5 | NC_004681.1 | + | 26829 | 0.69 | 0.677699 |
Target: 5'- gCCgAGGUUGGCCGGGGCGG-GCUUa-- -3' miRNA: 3'- -GG-UCCAGUUGGUCCUGCCgUGAGaug -5' |
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18525 | 3' | -54.5 | NC_004681.1 | + | 66626 | 0.69 | 0.688402 |
Target: 5'- aCCGGcUCuaucGCuCuGGACGGCGCUCUGg -3' miRNA: 3'- -GGUCcAGu---UG-GuCCUGCCGUGAGAUg -5' |
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18525 | 3' | -54.5 | NC_004681.1 | + | 15715 | 0.69 | 0.688402 |
Target: 5'- aCCGGG-CGAaguuGGACGccacGCACUCUGCg -3' miRNA: 3'- -GGUCCaGUUggu-CCUGC----CGUGAGAUG- -5' |
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18525 | 3' | -54.5 | NC_004681.1 | + | 40124 | 0.68 | 0.697991 |
Target: 5'- gCCAGGUCGGugaccgcCCGGGACaGGCAggCcGCg -3' miRNA: 3'- -GGUCCAGUU-------GGUCCUG-CCGUgaGaUG- -5' |
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18525 | 3' | -54.5 | NC_004681.1 | + | 67520 | 0.68 | 0.709641 |
Target: 5'- uCCGGGUUGGCCuugagccacuGGACGGC-CUUggGCu -3' miRNA: 3'- -GGUCCAGUUGGu---------CCUGCCGuGAGa-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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