miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18525 3' -54.5 NC_004681.1 + 474 0.66 0.813394
Target:  5'- cCCAGGUCuuGACCGcgggcucguccucgcGGAUGGCGCcCaugACg -3'
miRNA:   3'- -GGUCCAG--UUGGU---------------CCUGCCGUGaGa--UG- -5'
18525 3' -54.5 NC_004681.1 + 747 0.71 0.569986
Target:  5'- uCCAGGUCGACC-GGAuCGGCG-UCg-- -3'
miRNA:   3'- -GGUCCAGUUGGuCCU-GCCGUgAGaug -5'
18525 3' -54.5 NC_004681.1 + 995 0.7 0.591405
Target:  5'- -gAGG-CGgacGCCAGGGCGGCuucccgcucuCUCUGCa -3'
miRNA:   3'- ggUCCaGU---UGGUCCUGCCGu---------GAGAUG- -5'
18525 3' -54.5 NC_004681.1 + 4664 0.66 0.827884
Target:  5'- aCCAcuGGUCAgcaucgccACCgAGGAUGGUgaaacGCUUUGCg -3'
miRNA:   3'- -GGU--CCAGU--------UGG-UCCUGCCG-----UGAGAUG- -5'
18525 3' -54.5 NC_004681.1 + 5624 0.7 0.634572
Target:  5'- uCCAGGcCGguGCCGGuGugGGCACgcagCUGg -3'
miRNA:   3'- -GGUCCaGU--UGGUC-CugCCGUGa---GAUg -5'
18525 3' -54.5 NC_004681.1 + 7580 0.69 0.645381
Target:  5'- gCCGGGgaGGCCGuGAUGGCAC-CUACg -3'
miRNA:   3'- -GGUCCagUUGGUcCUGCCGUGaGAUG- -5'
18525 3' -54.5 NC_004681.1 + 8557 0.68 0.740921
Target:  5'- cCgGGGUCAGCCGccuUGGCGCUC-ACg -3'
miRNA:   3'- -GgUCCAGUUGGUccuGCCGUGAGaUG- -5'
18525 3' -54.5 NC_004681.1 + 10315 0.67 0.790791
Target:  5'- aCCGGGg-AGCCAGGGCcagguguggccGGUGCUCcACu -3'
miRNA:   3'- -GGUCCagUUGGUCCUG-----------CCGUGAGaUG- -5'
18525 3' -54.5 NC_004681.1 + 12576 0.73 0.466891
Target:  5'- cCCGGGUCAAacaccuucCCGGGcACGGCuCUCUu- -3'
miRNA:   3'- -GGUCCAGUU--------GGUCC-UGCCGuGAGAug -5'
18525 3' -54.5 NC_004681.1 + 15715 0.69 0.688402
Target:  5'- aCCGGG-CGAaguuGGACGccacGCACUCUGCg -3'
miRNA:   3'- -GGUCCaGUUggu-CCUGC----CGUGAGAUG- -5'
18525 3' -54.5 NC_004681.1 + 16182 0.71 0.547707
Target:  5'- gCCGcGGUgGugacgccACCgAGGGCGGCAgUCUGCg -3'
miRNA:   3'- -GGU-CCAgU-------UGG-UCCUGCCGUgAGAUG- -5'
18525 3' -54.5 NC_004681.1 + 16662 0.66 0.818885
Target:  5'- -aGGGUCucacugguGCUGGcGACGGCGCUCcgaGCa -3'
miRNA:   3'- ggUCCAGu-------UGGUC-CUGCCGUGAGa--UG- -5'
18525 3' -54.5 NC_004681.1 + 16688 0.75 0.324225
Target:  5'- gCAGGUCGACCgGGGACGccgggggcuuguaGCGCUCgucgGCa -3'
miRNA:   3'- gGUCCAGUUGG-UCCUGC-------------CGUGAGa---UG- -5'
18525 3' -54.5 NC_004681.1 + 17933 0.66 0.818885
Target:  5'- cCCGGGUUggUgAGGcCGGUGCcUUGCg -3'
miRNA:   3'- -GGUCCAGuuGgUCCuGCCGUGaGAUG- -5'
18525 3' -54.5 NC_004681.1 + 18298 0.68 0.730586
Target:  5'- cCCGGGggugcGCCGGGA-GGCGCUCc-- -3'
miRNA:   3'- -GGUCCagu--UGGUCCUgCCGUGAGaug -5'
18525 3' -54.5 NC_004681.1 + 19259 0.67 0.771248
Target:  5'- gCCAGGUCuucACCuGGACcGCGgUCaACa -3'
miRNA:   3'- -GGUCCAGu--UGGuCCUGcCGUgAGaUG- -5'
18525 3' -54.5 NC_004681.1 + 19364 0.67 0.790791
Target:  5'- aCCGGGUCGACCAcacCGGC-CUggGCg -3'
miRNA:   3'- -GGUCCAGUUGGUccuGCCGuGAgaUG- -5'
18525 3' -54.5 NC_004681.1 + 19411 0.66 0.827884
Target:  5'- aCGGG-CGACgAGGACgcaGGCG-UCUGCg -3'
miRNA:   3'- gGUCCaGUUGgUCCUG---CCGUgAGAUG- -5'
18525 3' -54.5 NC_004681.1 + 22399 0.67 0.781094
Target:  5'- gCuGGUCAccccgGCCGcGGACGGCAaccCUCcGCa -3'
miRNA:   3'- gGuCCAGU-----UGGU-CCUGCCGU---GAGaUG- -5'
18525 3' -54.5 NC_004681.1 + 26829 0.69 0.677699
Target:  5'- gCCgAGGUUGGCCGGGGCGG-GCUUa-- -3'
miRNA:   3'- -GG-UCCAGUUGGUCCUGCCgUGAGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.