Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18527 | 3' | -57.6 | NC_004681.1 | + | 54675 | 0.67 | 0.606797 |
Target: 5'- aUUGCGGGGGgcAGCUGGcUGAuGGuuCCCa -3' miRNA: 3'- cGGCGUCUCC--UCGACC-ACUuCCu-GGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 8763 | 0.67 | 0.617366 |
Target: 5'- -aCGaCAGGuucGGGCUGGUGAcGGGCCg -3' miRNA: 3'- cgGC-GUCUc--CUCGACCACUuCCUGGg -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 59366 | 0.67 | 0.627948 |
Target: 5'- aCCGUAGAGGAGUUccagcuUGccGGACCUg -3' miRNA: 3'- cGGCGUCUCCUCGAcc----ACuuCCUGGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 54936 | 0.67 | 0.649112 |
Target: 5'- gGUCGCAuGAuGAGCUGGUcGAAGGGg-- -3' miRNA: 3'- -CGGCGU-CUcCUCGACCA-CUUCCUggg -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 40736 | 0.67 | 0.649112 |
Target: 5'- cGUgGCGGAGuAGCUGGgaGAGGGcgGCCa -3' miRNA: 3'- -CGgCGUCUCcUCGACCa-CUUCC--UGGg -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 50385 | 0.66 | 0.658621 |
Target: 5'- gGCCGCGG-GGAcguggcccuucuuGC-GGUGGgcgcGGGACCa -3' miRNA: 3'- -CGGCGUCuCCU-------------CGaCCACU----UCCUGGg -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 55490 | 0.66 | 0.659677 |
Target: 5'- cGCCcaGCAGuGGAcgacgucgucGCUGGUGcAGGGCaCUu -3' miRNA: 3'- -CGG--CGUCuCCU----------CGACCACuUCCUG-GG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 41257 | 0.68 | 0.554409 |
Target: 5'- gGCCGCGGAGGuGCUu-----GGACUCa -3' miRNA: 3'- -CGGCGUCUCCuCGAccacuuCCUGGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 16396 | 0.68 | 0.533804 |
Target: 5'- gGCCGCGGggaugcccucgGGGAGCUGGUa----GCCCu -3' miRNA: 3'- -CGGCGUC-----------UCCUCGACCAcuuccUGGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 51481 | 0.74 | 0.275234 |
Target: 5'- uGCUGCAugucGAGGAGCUGG---GGGGCuCCg -3' miRNA: 3'- -CGGCGU----CUCCUCGACCacuUCCUG-GG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 36134 | 0.73 | 0.295965 |
Target: 5'- aCCGgGGAGGaAGCgugagcgacccGGUGAAGGuACCCa -3' miRNA: 3'- cGGCgUCUCC-UCGa----------CCACUUCC-UGGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 48850 | 0.72 | 0.325465 |
Target: 5'- cGCCGUccuGGAGGuGCUGGaccaAGGaGACCCa -3' miRNA: 3'- -CGGCG---UCUCCuCGACCac--UUC-CUGGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 62523 | 0.72 | 0.348989 |
Target: 5'- gGCgGCGGAGaGGGC-GGUGucGGcGCCCa -3' miRNA: 3'- -CGgCGUCUC-CUCGaCCACuuCC-UGGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 60123 | 0.72 | 0.357095 |
Target: 5'- aGCCGCcgaAGGcGAGCaGGUGcccaccgggcuuGAGGACCCg -3' miRNA: 3'- -CGGCG---UCUcCUCGaCCAC------------UUCCUGGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 24976 | 0.7 | 0.427477 |
Target: 5'- cGCCGCccucgccauuGCUGGUGAGGGAgCCu -3' miRNA: 3'- -CGGCGucuccu----CGACCACUUCCUgGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 7189 | 0.7 | 0.4546 |
Target: 5'- uGCCaGCGuuGAGGAGUUcccGGUgGggGGugCCg -3' miRNA: 3'- -CGG-CGU--CUCCUCGA---CCA-CuuCCugGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 28602 | 0.7 | 0.464166 |
Target: 5'- aCCGCGGGGGuGCccggGGUGAGuGuGAgCCCa -3' miRNA: 3'- cGGCGUCUCCuCGa---CCACUU-C-CU-GGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 41048 | 0.69 | 0.483609 |
Target: 5'- uGCUGCAGAugcuGCUGGagGAGacGGACCCu -3' miRNA: 3'- -CGGCGUCUccu-CGACCa-CUU--CCUGGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 44238 | 0.69 | 0.503433 |
Target: 5'- gGCCGguGAGGgccaggcccgcGGCcucgggGGUGAggcAGGugCCu -3' miRNA: 3'- -CGGCguCUCC-----------UCGa-----CCACU---UCCugGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 43911 | 0.69 | 0.523603 |
Target: 5'- uGCCGUAGcGGGGgUGGgcgcGGACCUc -3' miRNA: 3'- -CGGCGUCuCCUCgACCacuuCCUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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