Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18527 | 3' | -57.6 | NC_004681.1 | + | 68799 | 1.14 | 0.000418 |
Target: 5'- gGCCGCAGAGGAGCUGGUGAAGGACCCg -3' miRNA: 3'- -CGGCGUCUCCUCGACCACUUCCUGGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 40292 | 0.66 | 0.699526 |
Target: 5'- aGCCGaagcCAGGGGAGCUcaguagugggggcGGUGAagaaaucGGGauaguucuccucGCCCg -3' miRNA: 3'- -CGGC----GUCUCCUCGA-------------CCACU-------UCC------------UGGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 726 | 0.66 | 0.680726 |
Target: 5'- uGCCGgGaaucGAGGAcGaCUGGUGAcGGccuACCCg -3' miRNA: 3'- -CGGCgU----CUCCU-C-GACCACUuCC---UGGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 32699 | 0.66 | 0.659677 |
Target: 5'- cGUCGCGc---GGCUGGUGGaugAGGACCUc -3' miRNA: 3'- -CGGCGUcuccUCGACCACU---UCCUGGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 14484 | 0.67 | 0.638532 |
Target: 5'- cGCCgaGCAGGGcGcGCUGGUGGccGGugCUg -3' miRNA: 3'- -CGG--CGUCUC-CuCGACCACUu-CCugGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 28424 | 0.67 | 0.627948 |
Target: 5'- cCCGCGGAgauGGAGCUcGcGUGggGcacuCCCg -3' miRNA: 3'- cGGCGUCU---CCUCGA-C-CACuuCcu--GGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 69090 | 0.67 | 0.617366 |
Target: 5'- -aCGCGGGGGAGUgugugGuGUGAAGcGCCg -3' miRNA: 3'- cgGCGUCUCCUCGa----C-CACUUCcUGGg -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 48501 | 0.67 | 0.606797 |
Target: 5'- cGCCGCGGAgaacccGGAGCgGGUGgcGcACUg -3' miRNA: 3'- -CGGCGUCU------CCUCGaCCACuuCcUGGg -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 59306 | 0.68 | 0.533804 |
Target: 5'- uGCCGUuccGGGGAcucCUGcGUGGccAGGACCCc -3' miRNA: 3'- -CGGCGu--CUCCUc--GAC-CACU--UCCUGGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 12683 | 0.75 | 0.220003 |
Target: 5'- cGCCGCGGAgcucaaccguauGGAgGCUGGcaucGAGGGugCCa -3' miRNA: 3'- -CGGCGUCU------------CCU-CGACCa---CUUCCugGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 7914 | 0.75 | 0.23728 |
Target: 5'- aGCCGCcGAGGAGCcggaagaaguggUGGUcGAAGaGCCCu -3' miRNA: 3'- -CGGCGuCUCCUCG------------ACCA-CUUCcUGGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 31209 | 0.71 | 0.372857 |
Target: 5'- cGCCGCuuucGAGGAcaucgcaGCgUGGcUGggGGACCg -3' miRNA: 3'- -CGGCGu---CUCCU-------CG-ACC-ACuuCCUGGg -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 1138 | 0.71 | 0.417443 |
Target: 5'- gGCCGCgaGGGGGAGUccaaUGGguaaacgcGGACCCa -3' miRNA: 3'- -CGGCG--UCUCCUCG----ACCacuu----CCUGGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 67467 | 0.7 | 0.435793 |
Target: 5'- aGCCauCAGGGGAGCgcGGUGAgcGGGACg- -3' miRNA: 3'- -CGGc-GUCUCCUCGa-CCACU--UCCUGgg -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 40212 | 0.69 | 0.513478 |
Target: 5'- gGUCGUGGAGGAGCUugacGGUugcGcGGGAgCCa -3' miRNA: 3'- -CGGCGUCUCCUCGA----CCA---CuUCCUgGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 17779 | 0.66 | 0.701604 |
Target: 5'- aGgCGUAGucGGGAGCUgccGGUGAgagcGGGAUCg -3' miRNA: 3'- -CgGCGUC--UCCUCGA---CCACU----UCCUGGg -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 51481 | 0.74 | 0.275234 |
Target: 5'- uGCUGCAugucGAGGAGCUGG---GGGGCuCCg -3' miRNA: 3'- -CGGCGU----CUCCUCGACCacuUCCUG-GG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 36134 | 0.73 | 0.295965 |
Target: 5'- aCCGgGGAGGaAGCgugagcgacccGGUGAAGGuACCCa -3' miRNA: 3'- cGGCgUCUCC-UCGa----------CCACUUCC-UGGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 48850 | 0.72 | 0.325465 |
Target: 5'- cGCCGUccuGGAGGuGCUGGaccaAGGaGACCCa -3' miRNA: 3'- -CGGCG---UCUCCuCGACCac--UUC-CUGGG- -5' |
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18527 | 3' | -57.6 | NC_004681.1 | + | 62523 | 0.72 | 0.348989 |
Target: 5'- gGCgGCGGAGaGGGC-GGUGucGGcGCCCa -3' miRNA: 3'- -CGgCGUCUC-CUCGaCCACuuCC-UGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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