miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18527 3' -57.6 NC_004681.1 + 68799 1.14 0.000418
Target:  5'- gGCCGCAGAGGAGCUGGUGAAGGACCCg -3'
miRNA:   3'- -CGGCGUCUCCUCGACCACUUCCUGGG- -5'
18527 3' -57.6 NC_004681.1 + 40292 0.66 0.699526
Target:  5'- aGCCGaagcCAGGGGAGCUcaguagugggggcGGUGAagaaaucGGGauaguucuccucGCCCg -3'
miRNA:   3'- -CGGC----GUCUCCUCGA-------------CCACU-------UCC------------UGGG- -5'
18527 3' -57.6 NC_004681.1 + 726 0.66 0.680726
Target:  5'- uGCCGgGaaucGAGGAcGaCUGGUGAcGGccuACCCg -3'
miRNA:   3'- -CGGCgU----CUCCU-C-GACCACUuCC---UGGG- -5'
18527 3' -57.6 NC_004681.1 + 32699 0.66 0.659677
Target:  5'- cGUCGCGc---GGCUGGUGGaugAGGACCUc -3'
miRNA:   3'- -CGGCGUcuccUCGACCACU---UCCUGGG- -5'
18527 3' -57.6 NC_004681.1 + 14484 0.67 0.638532
Target:  5'- cGCCgaGCAGGGcGcGCUGGUGGccGGugCUg -3'
miRNA:   3'- -CGG--CGUCUC-CuCGACCACUu-CCugGG- -5'
18527 3' -57.6 NC_004681.1 + 28424 0.67 0.627948
Target:  5'- cCCGCGGAgauGGAGCUcGcGUGggGcacuCCCg -3'
miRNA:   3'- cGGCGUCU---CCUCGA-C-CACuuCcu--GGG- -5'
18527 3' -57.6 NC_004681.1 + 69090 0.67 0.617366
Target:  5'- -aCGCGGGGGAGUgugugGuGUGAAGcGCCg -3'
miRNA:   3'- cgGCGUCUCCUCGa----C-CACUUCcUGGg -5'
18527 3' -57.6 NC_004681.1 + 48501 0.67 0.606797
Target:  5'- cGCCGCGGAgaacccGGAGCgGGUGgcGcACUg -3'
miRNA:   3'- -CGGCGUCU------CCUCGaCCACuuCcUGGg -5'
18527 3' -57.6 NC_004681.1 + 59306 0.68 0.533804
Target:  5'- uGCCGUuccGGGGAcucCUGcGUGGccAGGACCCc -3'
miRNA:   3'- -CGGCGu--CUCCUc--GAC-CACU--UCCUGGG- -5'
18527 3' -57.6 NC_004681.1 + 12683 0.75 0.220003
Target:  5'- cGCCGCGGAgcucaaccguauGGAgGCUGGcaucGAGGGugCCa -3'
miRNA:   3'- -CGGCGUCU------------CCU-CGACCa---CUUCCugGG- -5'
18527 3' -57.6 NC_004681.1 + 7914 0.75 0.23728
Target:  5'- aGCCGCcGAGGAGCcggaagaaguggUGGUcGAAGaGCCCu -3'
miRNA:   3'- -CGGCGuCUCCUCG------------ACCA-CUUCcUGGG- -5'
18527 3' -57.6 NC_004681.1 + 31209 0.71 0.372857
Target:  5'- cGCCGCuuucGAGGAcaucgcaGCgUGGcUGggGGACCg -3'
miRNA:   3'- -CGGCGu---CUCCU-------CG-ACC-ACuuCCUGGg -5'
18527 3' -57.6 NC_004681.1 + 1138 0.71 0.417443
Target:  5'- gGCCGCgaGGGGGAGUccaaUGGguaaacgcGGACCCa -3'
miRNA:   3'- -CGGCG--UCUCCUCG----ACCacuu----CCUGGG- -5'
18527 3' -57.6 NC_004681.1 + 67467 0.7 0.435793
Target:  5'- aGCCauCAGGGGAGCgcGGUGAgcGGGACg- -3'
miRNA:   3'- -CGGc-GUCUCCUCGa-CCACU--UCCUGgg -5'
18527 3' -57.6 NC_004681.1 + 40212 0.69 0.513478
Target:  5'- gGUCGUGGAGGAGCUugacGGUugcGcGGGAgCCa -3'
miRNA:   3'- -CGGCGUCUCCUCGA----CCA---CuUCCUgGG- -5'
18527 3' -57.6 NC_004681.1 + 17779 0.66 0.701604
Target:  5'- aGgCGUAGucGGGAGCUgccGGUGAgagcGGGAUCg -3'
miRNA:   3'- -CgGCGUC--UCCUCGA---CCACU----UCCUGGg -5'
18527 3' -57.6 NC_004681.1 + 51481 0.74 0.275234
Target:  5'- uGCUGCAugucGAGGAGCUGG---GGGGCuCCg -3'
miRNA:   3'- -CGGCGU----CUCCUCGACCacuUCCUG-GG- -5'
18527 3' -57.6 NC_004681.1 + 36134 0.73 0.295965
Target:  5'- aCCGgGGAGGaAGCgugagcgacccGGUGAAGGuACCCa -3'
miRNA:   3'- cGGCgUCUCC-UCGa----------CCACUUCC-UGGG- -5'
18527 3' -57.6 NC_004681.1 + 48850 0.72 0.325465
Target:  5'- cGCCGUccuGGAGGuGCUGGaccaAGGaGACCCa -3'
miRNA:   3'- -CGGCG---UCUCCuCGACCac--UUC-CUGGG- -5'
18527 3' -57.6 NC_004681.1 + 62523 0.72 0.348989
Target:  5'- gGCgGCGGAGaGGGC-GGUGucGGcGCCCa -3'
miRNA:   3'- -CGgCGUCUC-CUCGaCCACuuCC-UGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.