miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18527 3' -57.6 NC_004681.1 + 726 0.66 0.680726
Target:  5'- uGCCGgGaaucGAGGAcGaCUGGUGAcGGccuACCCg -3'
miRNA:   3'- -CGGCgU----CUCCU-C-GACCACUuCC---UGGG- -5'
18527 3' -57.6 NC_004681.1 + 1138 0.71 0.417443
Target:  5'- gGCCGCgaGGGGGAGUccaaUGGguaaacgcGGACCCa -3'
miRNA:   3'- -CGGCG--UCUCCUCG----ACCacuu----CCUGGG- -5'
18527 3' -57.6 NC_004681.1 + 3063 0.68 0.558559
Target:  5'- gGCCGCGaauaucucGGGGuccucGCUGGUGAAcucggcgcgcguggcGGugCCg -3'
miRNA:   3'- -CGGCGU--------CUCCu----CGACCACUU---------------CCugGG- -5'
18527 3' -57.6 NC_004681.1 + 7189 0.7 0.4546
Target:  5'- uGCCaGCGuuGAGGAGUUcccGGUgGggGGugCCg -3'
miRNA:   3'- -CGG-CGU--CUCCUCGA---CCA-CuuCCugGG- -5'
18527 3' -57.6 NC_004681.1 + 7914 0.75 0.23728
Target:  5'- aGCCGCcGAGGAGCcggaagaaguggUGGUcGAAGaGCCCu -3'
miRNA:   3'- -CGGCGuCUCCUCG------------ACCA-CUUCcUGGG- -5'
18527 3' -57.6 NC_004681.1 + 8615 0.66 0.680726
Target:  5'- gGCCGC--GGGGGC-GGUcucaccguccgcGAAGGcGCCCa -3'
miRNA:   3'- -CGGCGucUCCUCGaCCA------------CUUCC-UGGG- -5'
18527 3' -57.6 NC_004681.1 + 8763 0.67 0.617366
Target:  5'- -aCGaCAGGuucGGGCUGGUGAcGGGCCg -3'
miRNA:   3'- cgGC-GUCUc--CUCGACCACUuCCUGGg -5'
18527 3' -57.6 NC_004681.1 + 12683 0.75 0.220003
Target:  5'- cGCCGCGGAgcucaaccguauGGAgGCUGGcaucGAGGGugCCa -3'
miRNA:   3'- -CGGCGUCU------------CCU-CGACCa---CUUCCugGG- -5'
18527 3' -57.6 NC_004681.1 + 14484 0.67 0.638532
Target:  5'- cGCCgaGCAGGGcGcGCUGGUGGccGGugCUg -3'
miRNA:   3'- -CGG--CGUCUC-CuCGACCACUu-CCugGG- -5'
18527 3' -57.6 NC_004681.1 + 16396 0.68 0.533804
Target:  5'- gGCCGCGGggaugcccucgGGGAGCUGGUa----GCCCu -3'
miRNA:   3'- -CGGCGUC-----------UCCUCGACCAcuuccUGGG- -5'
18527 3' -57.6 NC_004681.1 + 17779 0.66 0.701604
Target:  5'- aGgCGUAGucGGGAGCUgccGGUGAgagcGGGAUCg -3'
miRNA:   3'- -CgGCGUC--UCCUCGA---CCACU----UCCUGGg -5'
18527 3' -57.6 NC_004681.1 + 24976 0.7 0.427477
Target:  5'- cGCCGCccucgccauuGCUGGUGAGGGAgCCu -3'
miRNA:   3'- -CGGCGucuccu----CGACCACUUCCUgGG- -5'
18527 3' -57.6 NC_004681.1 + 26965 0.66 0.670218
Target:  5'- cGCCGCcauAGGuGGC-GGUGggGaccGGCCCa -3'
miRNA:   3'- -CGGCGuc-UCC-UCGaCCACuuC---CUGGG- -5'
18527 3' -57.6 NC_004681.1 + 28424 0.67 0.627948
Target:  5'- cCCGCGGAgauGGAGCUcGcGUGggGcacuCCCg -3'
miRNA:   3'- cGGCGUCU---CCUCGA-C-CACuuCcu--GGG- -5'
18527 3' -57.6 NC_004681.1 + 28602 0.7 0.464166
Target:  5'- aCCGCGGGGGuGCccggGGUGAGuGuGAgCCCa -3'
miRNA:   3'- cGGCGUCUCCuCGa---CCACUU-C-CU-GGG- -5'
18527 3' -57.6 NC_004681.1 + 31209 0.71 0.372857
Target:  5'- cGCCGCuuucGAGGAcaucgcaGCgUGGcUGggGGACCg -3'
miRNA:   3'- -CGGCGu---CUCCU-------CG-ACC-ACuuCCUGGg -5'
18527 3' -57.6 NC_004681.1 + 32699 0.66 0.659677
Target:  5'- cGUCGCGc---GGCUGGUGGaugAGGACCUc -3'
miRNA:   3'- -CGGCGUcuccUCGACCACU---UCCUGGG- -5'
18527 3' -57.6 NC_004681.1 + 36134 0.73 0.295965
Target:  5'- aCCGgGGAGGaAGCgugagcgacccGGUGAAGGuACCCa -3'
miRNA:   3'- cGGCgUCUCC-UCGa----------CCACUUCC-UGGG- -5'
18527 3' -57.6 NC_004681.1 + 36789 0.68 0.585727
Target:  5'- uCCGUccccgauGAGGAGCccgUGGUGAugcugcucucGGACCCc -3'
miRNA:   3'- cGGCGu------CUCCUCG---ACCACUu---------CCUGGG- -5'
18527 3' -57.6 NC_004681.1 + 37726 0.76 0.183835
Target:  5'- -gCGCgaGGAGGAGCUGGaGAAGGugCUc -3'
miRNA:   3'- cgGCG--UCUCCUCGACCaCUUCCugGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.