miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18528 3' -58.3 NC_004681.1 + 27939 0.66 0.667141
Target:  5'- ---aCGGCacggCUGUGGGCAUCACUg- -3'
miRNA:   3'- uacaGCCGga--GGCACCUGUAGUGGgg -5'
18528 3' -58.3 NC_004681.1 + 12646 0.66 0.656622
Target:  5'- -cGUgGGCUgacggCGUGGAUGggggCACCCCc -3'
miRNA:   3'- uaCAgCCGGag---GCACCUGUa---GUGGGG- -5'
18528 3' -58.3 NC_004681.1 + 18138 0.66 0.614425
Target:  5'- -cG-CGGCgCUgCCGUGaGGCGUUGCCCg -3'
miRNA:   3'- uaCaGCCG-GA-GGCAC-CUGUAGUGGGg -5'
18528 3' -58.3 NC_004681.1 + 16077 0.67 0.60389
Target:  5'- cUGcCGcCCUCgGUGG-CGUCACCaCCg -3'
miRNA:   3'- uACaGCcGGAGgCACCuGUAGUGG-GG- -5'
18528 3' -58.3 NC_004681.1 + 22374 0.67 0.582895
Target:  5'- ----aGGaCCUCCccgacgucgaGUGGACGcuggUCACCCCg -3'
miRNA:   3'- uacagCC-GGAGG----------CACCUGU----AGUGGGG- -5'
18528 3' -58.3 NC_004681.1 + 53711 0.67 0.582895
Target:  5'- --cUUGGCCUCCGUcuGGGCcucuucCACCCa -3'
miRNA:   3'- uacAGCCGGAGGCA--CCUGua----GUGGGg -5'
18528 3' -58.3 NC_004681.1 + 16633 0.67 0.582895
Target:  5'- ---aCGGCCgCCGUGGGgacCGUUGCCgCCa -3'
miRNA:   3'- uacaGCCGGaGGCACCU---GUAGUGG-GG- -5'
18528 3' -58.3 NC_004681.1 + 6014 0.67 0.57245
Target:  5'- cUG-CGGCgUCUac-GACAUCGCCCCu -3'
miRNA:   3'- uACaGCCGgAGGcacCUGUAGUGGGG- -5'
18528 3' -58.3 NC_004681.1 + 50559 0.67 0.57245
Target:  5'- ---aCGGUCgggGUGGGCGUCGCCCa -3'
miRNA:   3'- uacaGCCGGaggCACCUGUAGUGGGg -5'
18528 3' -58.3 NC_004681.1 + 17017 0.68 0.541412
Target:  5'- --cUUGGCCUUC-UGGAUGUCAUCCUc -3'
miRNA:   3'- uacAGCCGGAGGcACCUGUAGUGGGG- -5'
18528 3' -58.3 NC_004681.1 + 30563 0.68 0.541412
Target:  5'- -aGUCGGugcCCUgguggacguUCGUGGGCGagagCGCCCCg -3'
miRNA:   3'- uaCAGCC---GGA---------GGCACCUGUa---GUGGGG- -5'
18528 3' -58.3 NC_004681.1 + 58918 0.68 0.500961
Target:  5'- uUGUUGGCCUCUGUccgGGugAg-GCCCa -3'
miRNA:   3'- uACAGCCGGAGGCA---CCugUagUGGGg -5'
18528 3' -58.3 NC_004681.1 + 45547 0.68 0.500961
Target:  5'- -aGUCgGGCaagaagcggCUCCuggagcagGUGGACAUCGCCCg -3'
miRNA:   3'- uaCAG-CCG---------GAGG--------CACCUGUAGUGGGg -5'
18528 3' -58.3 NC_004681.1 + 66058 0.69 0.481236
Target:  5'- --cUCGGCCUUCGUgccguagcGGAUGUCAUgCCa -3'
miRNA:   3'- uacAGCCGGAGGCA--------CCUGUAGUGgGG- -5'
18528 3' -58.3 NC_004681.1 + 56887 0.69 0.449548
Target:  5'- gAUGUgGGCgaCCcgguagacguacagGUGGGCcUCGCCCCg -3'
miRNA:   3'- -UACAgCCGgaGG--------------CACCUGuAGUGGGG- -5'
18528 3' -58.3 NC_004681.1 + 33011 0.69 0.442974
Target:  5'- -aG-CGGCCUgCCGaccucgGGACAuggcaUCGCCCCc -3'
miRNA:   3'- uaCaGCCGGA-GGCa-----CCUGU-----AGUGGGG- -5'
18528 3' -58.3 NC_004681.1 + 6411 0.69 0.433678
Target:  5'- -cGUCGGCCUUCG-GGuCAUCcgACCgCg -3'
miRNA:   3'- uaCAGCCGGAGGCaCCuGUAG--UGGgG- -5'
18528 3' -58.3 NC_004681.1 + 41942 0.71 0.355441
Target:  5'- -gGUCGG-CUCCGcGGAgAUCGgCCCg -3'
miRNA:   3'- uaCAGCCgGAGGCaCCUgUAGUgGGG- -5'
18528 3' -58.3 NC_004681.1 + 9169 0.71 0.339458
Target:  5'- -cGUCuucgacGCCUUCGUGGACAUCcagcugACCCUg -3'
miRNA:   3'- uaCAGc-----CGGAGGCACCUGUAG------UGGGG- -5'
18528 3' -58.3 NC_004681.1 + 6904 0.72 0.324003
Target:  5'- cAUGUCcguGGCCaccaCCGUGGGCucguucCACCCCu -3'
miRNA:   3'- -UACAG---CCGGa---GGCACCUGua----GUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.