Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18530 | 3' | -57.6 | NC_004681.1 | + | 3506 | 0.66 | 0.634256 |
Target: 5'- gCGCGUGG-CUCGcGCGGgcGC-CGCGg -3' miRNA: 3'- aGCGUAUCgGAGU-CGCCauCGcGCGU- -5' |
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18530 | 3' | -57.6 | NC_004681.1 | + | 4225 | 0.73 | 0.289602 |
Target: 5'- gUUGCG-GGCCUCAGCGGccuGCuuGCGCAu -3' miRNA: 3'- -AGCGUaUCGGAGUCGCCau-CG--CGCGU- -5' |
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18530 | 3' | -57.6 | NC_004681.1 | + | 5340 | 0.66 | 0.666388 |
Target: 5'- cUGCAU-GCCcaCAGCGG--GCGCGUAg -3' miRNA: 3'- aGCGUAuCGGa-GUCGCCauCGCGCGU- -5' |
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18530 | 3' | -57.6 | NC_004681.1 | + | 6196 | 0.72 | 0.326726 |
Target: 5'- aUCGcCAUGGUgUC-GCGGUAgaacGCGCGCAu -3' miRNA: 3'- -AGC-GUAUCGgAGuCGCCAU----CGCGCGU- -5' |
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18530 | 3' | -57.6 | NC_004681.1 | + | 12485 | 0.67 | 0.602105 |
Target: 5'- -aGCGUcGCCgCGGUGGUGGUGC-CAc -3' miRNA: 3'- agCGUAuCGGaGUCGCCAUCGCGcGU- -5' |
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18530 | 3' | -57.6 | NC_004681.1 | + | 13234 | 0.67 | 0.559615 |
Target: 5'- cCGCcguGCCacgaagGGCGGUGGCGgGCAg -3' miRNA: 3'- aGCGuauCGGag----UCGCCAUCGCgCGU- -5' |
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18530 | 3' | -57.6 | NC_004681.1 | + | 13681 | 0.69 | 0.458097 |
Target: 5'- -gGCGUGGCCgcccGCGGccuugaAGCGCGCGu -3' miRNA: 3'- agCGUAUCGGagu-CGCCa-----UCGCGCGU- -5' |
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18530 | 3' | -57.6 | NC_004681.1 | + | 14331 | 0.68 | 0.518001 |
Target: 5'- cCGCGUcAG-CUCAGCcuGGUAGCgGCGUAg -3' miRNA: 3'- aGCGUA-UCgGAGUCG--CCAUCG-CGCGU- -5' |
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18530 | 3' | -57.6 | NC_004681.1 | + | 14589 | 0.66 | 0.649268 |
Target: 5'- -aGCAccGGCCaccagcgcgcccugcUCGGCGGaggcGGCGCGCGc -3' miRNA: 3'- agCGUa-UCGG---------------AGUCGCCa---UCGCGCGU- -5' |
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18530 | 3' | -57.6 | NC_004681.1 | + | 17410 | 0.67 | 0.602105 |
Target: 5'- gCGUGUAGCgUCccGCGGgcacGCGCGCc -3' miRNA: 3'- aGCGUAUCGgAGu-CGCCau--CGCGCGu -5' |
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18530 | 3' | -57.6 | NC_004681.1 | + | 18316 | 0.66 | 0.631038 |
Target: 5'- -aGC--AGCCUUccgguucguccgguGGCGGUGGCGgGCu -3' miRNA: 3'- agCGuaUCGGAG--------------UCGCCAUCGCgCGu -5' |
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18530 | 3' | -57.6 | NC_004681.1 | + | 27921 | 0.69 | 0.473725 |
Target: 5'- aCGCGgGGCCUCGGCGGcacggcacggcuGUGgGCAu -3' miRNA: 3'- aGCGUaUCGGAGUCGCCau----------CGCgCGU- -5' |
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18530 | 3' | -57.6 | NC_004681.1 | + | 30970 | 0.72 | 0.326726 |
Target: 5'- gUCGCGgGGCUcCAGCGGgucGGCGgGCGg -3' miRNA: 3'- -AGCGUaUCGGaGUCGCCa--UCGCgCGU- -5' |
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18530 | 3' | -57.6 | NC_004681.1 | + | 32221 | 0.67 | 0.591426 |
Target: 5'- -aGCA-GGCCaucgCAGCGGcAGCGCGg- -3' miRNA: 3'- agCGUaUCGGa---GUCGCCaUCGCGCgu -5' |
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18530 | 3' | -57.6 | NC_004681.1 | + | 37660 | 0.69 | 0.458098 |
Target: 5'- cUGCGgGGCCUCgccAGCGGccGCGCGUc -3' miRNA: 3'- aGCGUaUCGGAG---UCGCCauCGCGCGu -5' |
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18530 | 3' | -57.6 | NC_004681.1 | + | 38905 | 0.78 | 0.122449 |
Target: 5'- cCGgAUGGUCUCGGCGGacuuGCGCGCGg -3' miRNA: 3'- aGCgUAUCGGAGUCGCCau--CGCGCGU- -5' |
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18530 | 3' | -57.6 | NC_004681.1 | + | 41669 | 0.67 | 0.559615 |
Target: 5'- gCGCu--GCCUgCGG-GGUGGCGCuGCAu -3' miRNA: 3'- aGCGuauCGGA-GUCgCCAUCGCG-CGU- -5' |
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18530 | 3' | -57.6 | NC_004681.1 | + | 47169 | 0.66 | 0.634256 |
Target: 5'- uUCGCGgcGGCgUUccuGGCGGgguGCGCGCu -3' miRNA: 3'- -AGCGUa-UCGgAG---UCGCCau-CGCGCGu -5' |
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18530 | 3' | -57.6 | NC_004681.1 | + | 48323 | 0.68 | 0.507785 |
Target: 5'- -gGCG-AGCCUCGGCGagggccagcuuGUAgGCGCGCu -3' miRNA: 3'- agCGUaUCGGAGUCGC-----------CAU-CGCGCGu -5' |
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18530 | 3' | -57.6 | NC_004681.1 | + | 50487 | 0.71 | 0.384419 |
Target: 5'- gUCGcCGUAGUCguggUAGCGGUAGC-CGCc -3' miRNA: 3'- -AGC-GUAUCGGa---GUCGCCAUCGcGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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